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2 changes: 1 addition & 1 deletion src/argument_parsing.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@
// SPDX-License-Identifier: BSD-3-Clause

#include <algorithm> // for find_if
#include <charconv> // for from_chars
#include <cstddef> // for size_t
#include <filesystem> // for operator<<, operator>>
#include <iomanip> // for operator<<, quoted
Expand All @@ -17,7 +18,6 @@
#include <sharg/detail/to_string.hpp> // for to_string
#include <sharg/exceptions.hpp> // for validation_error
#include <sharg/parser.hpp> // for parser
#include <sharg/std/charconv> // for from_chars
#include <sharg/validators.hpp> // for arithmetic_range_validator, input_file_validator, output_file_open_...

#include <fpgalign/argument_parsing.hpp> // for parse_result, subcommand, parse_arguments
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5 changes: 2 additions & 3 deletions src/search/do_alignment.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -3,18 +3,17 @@
// SPDX-License-Identifier: BSD-3-Clause

#include <algorithm> // for find_if
#include <charconv> // for to_chars
#include <cstddef> // for size_t
#include <cstdint> // for uint8_t
#include <filesystem> // for path
#include <iterator> // for __next, next
#include <ranges> // for transform_view, __fn, tra...
#include <string> // for basic_string
#include <tuple> // for tuple, tuple_cat, tie
#include <utility> // for pair
#include <utility> // for get
#include <vector> // for vector

#include <sharg/std/charconv> // for to_chars

#include <seqan3/alignment/cigar_conversion/cigar_from_alignment.hpp> // for cigar_from_alignment
#include <seqan3/alignment/configuration/align_config_edit.hpp> // for edit_scheme
#include <seqan3/alignment/configuration/align_config_gap_cost_affine.hpp> // for gap_cost_affine
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