Skip to content

feat: chelae/trim#11896

Open
emmcauley wants to merge 1 commit into
nf-core:masterfrom
fulcrumgenomics:em_chelae
Open

feat: chelae/trim#11896
emmcauley wants to merge 1 commit into
nf-core:masterfrom
fulcrumgenomics:em_chelae

Conversation

@emmcauley
Copy link
Copy Markdown
Contributor

PR checklist

Closes #11894.

This PR adds an nf-core module for chelae/trim. Chelae performs common short-read preprocessing tasks in one pass.

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@emmcauley emmcauley force-pushed the em_chelae branch 2 times, most recently from 247b79b to 831905c Compare June 6, 2026 14:43
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

new module: chelae/trim

1 participant