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Pull requests: nf-core/modules

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Pull requests list

Update mobster module
#9727 opened Jan 21, 2026 by elena-buscaroli Loading…
1 of 17 tasks
1
1
Add nextflow lint
#9726 opened Jan 21, 2026 by maxulysse Loading…
17 tasks
4
Merge optional output channels in a single output. (last/* modules only)
#9720 opened Jan 21, 2026 by charles-plessy Loading…
15 of 17 tasks
1
feat: hisat3n/align
#9718 opened Jan 20, 2026 by emmcauley Loading…
11 of 17 tasks
1
3
feat(yallhap/classify): Add new module for Y-chromosome haplogroup classification
#9704 opened Jan 20, 2026 by trianglegrrl Loading…
4 tasks done
3
Convert sentieon modules to topics and update version
#9700 opened Jan 20, 2026 by SPPearce Loading…
parabricks topic port
#9690 opened Jan 19, 2026 by famosab Loading…
17 tasks
10
Seqkit replace - fix #9647 and #9646
#9686 opened Jan 19, 2026 by ammaraziz Loading…
1
1
Update all deeptools conda environment YAML files to version 3.5.6
#9685 opened Jan 16, 2026 by bentyeh Loading…
2 of 17 tasks
7
Fix variable redeclarations for strict syntax compliance
#9684 opened Jan 16, 2026 by ewels • Draft
20
fix(picard/markduplicates): add missing bai index file to stub output
#9676 opened Jan 16, 2026 by adamrtalbot Loading…
Update amulety modules
#9674 opened Jan 15, 2026 by ggabernet Loading…
10
feat(merquryfk/merquryfk): use topic versions and emit all images in single channel
#9672 opened Jan 15, 2026 by prototaxites Loading…
3 of 17 tasks
13
fix(fastk/merge): use topic versions and update snapshots Ready for Review
#9666 opened Jan 15, 2026 by prototaxites Loading…
3 of 17 tasks
5
new subworkflow - fastq shortreads preprocess qc
#9665 opened Jan 15, 2026 by vagkaratzas Loading…
8 of 17 tasks
1
22
Add tmb module new module Adding a new module Ready for Review
#9660 opened Jan 15, 2026 by georgiakes Loading…
11 of 17 tasks
12
Shigapass
#9658 opened Jan 15, 2026 by eit-maxlcummins Loading…
12 of 17 tasks
1
Prepare gens input data module
#9656 opened Jan 15, 2026 by Jakob37 • Draft
8 of 17 tasks
1
Add ViralConsensus module
#9655 opened Jan 14, 2026 by lucaspatel Loading…
15 of 17 tasks
1
7
Bump openms version to 3.5.0 and migrate to version topics
#9638 opened Jan 12, 2026 by jonasscheid Loading…
17 tasks
22
add nirvana
#9633 opened Jan 9, 2026 by FriederikeHanssen Loading…
17 tasks
8
BBsplit unmapped - enhancement
#9627 opened Jan 8, 2026 by EladH1 Loading…
4 of 17 tasks
Add gapseq modules for bacterial metabolic pathway analysis
#9620 opened Jan 7, 2026 by Copilot AI • Draft
1
@brovolia
Update samtools/index to version topic
#9613 opened Dec 31, 2025 by SPPearce Loading…
3
traitar module is drafted
#9605 opened Dec 22, 2025 by brovolia Loading…
1
@brovolia
32
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