Skip to content

Pull requests: nf-core/modules

New pull request New
196 Open 7,942 Closed
196 Open 7,942 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Add poppunk/createdb module
#11118 opened Apr 2, 2026 by cwoodside1278 Loading…
@cwoodside1278
feat: gridss/annotate nf-core module
#11117 opened Apr 2, 2026 by emmcauley Loading…
5 of 17 tasks
1
Add circlator/all module
#11116 opened Apr 2, 2026 by cwoodside1278 Loading…
11 of 14 tasks
1
@cwoodside1278
New module : portello
#11114 opened Apr 2, 2026 by sofiademmou Loading…
12 of 17 tasks
9
feat(coverm/{contig,genome}): add bam output
#11111 opened Apr 1, 2026 by dialvarezs Loading…
4 of 17 tasks
@jfy133 @prototaxites
34
add methurator gtestimator and plot modules
#11110 opened Apr 1, 2026 by edogiuili Loading…
9 of 17 tasks
22
Add metamap for input/output in stringtie/merge Ready for Review
#11108 opened Apr 1, 2026 by Odulhin Loading…
1
@Odulhin
14
chore(deps): update dependency askimed/nf-test to v0.9.5 size/xs
#11099 opened Apr 1, 2026 by renovate bot Loading…
2 tasks
new module: vcfpartition Ready for Review
#11098 opened Mar 31, 2026 by camlloyd Loading…
11 of 17 tasks
1
11
add dds/createproject new module Adding a new module
#11094 opened Mar 31, 2026 by annaasklof • Draft
17 tasks
1
1
fix(merqury): make optional spectra fl and st png outputs
#11093 opened Mar 31, 2026 by MohineTAlam Loading…
8 of 17 tasks
8
feat: civicpy/annotate module
#11079 opened Mar 27, 2026 by emmcauley Loading…
5 of 17 tasks
1
1
add batch testing
#11071 opened Mar 27, 2026 by mashehu Loading…
Update cellranger multi module to comply to nf-core guidelines
#11066 opened Mar 27, 2026 by mahesh-panchal • Draft
2 of 17 tasks
tabix/tabix: update module to support region-based VCF extraction
#11064 opened Mar 27, 2026 by luisas Loading…
12 of 17 tasks
21
Add snpclustering subworkflow
#11059 opened Mar 26, 2026 by dbaku42 Loading…
3 tasks done
7
Anarcii
#11058 opened Mar 26, 2026 by Clara0611 Loading…
12 of 14 tasks
1
16
New modules: Llamacpp-python/run and huggingface/download for allowing to run simple text workloads with local LLMs new module Adding a new module Ready for Review
#11053 opened Mar 26, 2026 by toniher Loading…
13 of 17 tasks
12
Bump CuteSV version
#11052 opened Mar 26, 2026 by awgymer Loading…
17 tasks
2
Masurca container-issue help wanted Extra attention is needed
#11049 opened Mar 25, 2026 by LiaOb21 • Draft
17 tasks
1
20
Update pairtools to 1.1.3 and migrating to topic version
#11039 opened Mar 25, 2026 by birkiy Loading…
9
Big slice imp modules
#11034 opened Mar 24, 2026 by SkyLexS Loading…
9 of 14 tasks
18
New module: exomiser/analyse size/m
#11023 opened Mar 23, 2026 by matthdsm • Draft
17 tasks
@matthdsm
23
add fgumi sort/zipper modules size/m
#11017 opened Mar 23, 2026 by matthdsm • Draft
17 tasks
@matthdsm
1
UNZIP: modernize to latest nf-core conventions
#11014 opened Mar 22, 2026 by maxcumminsandfred-lab Loading…
10 of 14 tasks
2
ProTip! What’s not been updated in a month: updated:<2026-03-04.