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Pull requests: nf-core/modules

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Pull requests list

update bclconvert with topic
#9494 opened Dec 2, 2025 by matthdsm Loading…
17 tasks
1
5787 new module whatshap/stats
#9490 opened Dec 2, 2025 by eliottBo Loading…
8 of 17 tasks
1
@eliottBo
2
tcoffee_extractfrompdb test: sort file listing so "first" file is deterministic
#9489 opened Dec 1, 2025 by nathanweeks Loading…
1 of 17 tasks
RiboCode - prepare_transcripts, metaplots, ribocode
#9485 opened Dec 1, 2025 by JackCurragh Loading…
11 of 17 tasks
1
13
plastid metagene_generate, make_wiggle, psite
#9482 opened Dec 1, 2025 by suhrig Loading…
12 of 14 tasks
Hiphase: update version to 1.5.0 and add phased bam file as an output enhancement New feature or request update module
#9477 opened Nov 28, 2025 by chaochaowong Loading…
12 of 14 tasks
@chaochaowong
New Module - Orfipy new module Adding a new module
#9476 opened Nov 28, 2025 by khersameesh24 Loading…
1
@khersameesh24
1
New module - TD2 (added modules for td2.longorfs & td2.predict) new module Adding a new module
#9475 opened Nov 28, 2025 by khersameesh24 Loading…
1
@khersameesh24
6
Update test files for Glimpse Ready for Review
#9467 opened Nov 26, 2025 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
6
Fix test path modification
#9465 opened Nov 26, 2025 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
1
Update shapeit test and input tuple Ready for Review
#9463 opened Nov 26, 2025 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
fix issue 9424: MultiQC report handling for AWS batch with S3 workDir
#9455 opened Nov 25, 2025 by SZhengP Loading…
3 of 17 tasks
1
update and add topics to snakemake module
#9454 opened Nov 25, 2025 by maxulysse Loading…
17 tasks
Add minimac4 imputation subworkfllow new subworkflow
#9451 opened Nov 25, 2025 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
Add quilt imputation subworkflow new subworkflow
#9443 opened Nov 24, 2025 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
fix: kmer env output missing when scientific notation found
#9442 opened Nov 24, 2025 by CormacKinsella Loading…
17 tasks
1
Update output paths in bases2fastq module
#9436 opened Nov 21, 2025 by lucacozzuto Loading…
6 of 16 tasks
Refactor GAWK implicit closures
#9435 opened Nov 21, 2025 by DLBPointon Loading…
Update glimpse2 imputation subworkflow Ready for Review subworkflows update module update subworkflow
#9434 opened Nov 20, 2025 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
New module: whatshap/phase
#9431 opened Nov 19, 2025 by HaidYi Loading…
12 of 17 tasks
1
@HaidYi
16
Updare fgbio/copyumifromreadname
#9373 opened Nov 10, 2025 by SPPearce • Draft
Add module: TRIDENT_FETCH
#9360 opened Nov 7, 2025 by TCLamnidis Loading…
4 of 20 tasks
5
Vcf vembrane
#9345 opened Nov 5, 2025 by dhtt • Draft
12 of 17 tasks
@dhtt
1
Use tar --no-same-owner option for untar module
#9338 opened Nov 4, 2025 by nathanweeks Loading…
2 of 17 tasks
9
Add fq2bam fq align dd bwamem
#9309 opened Oct 30, 2025 by eduard-watchmaker Loading…
17 tasks
54
ProTip! Updated in the last three days: updated:>2025-11-29.