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Pull requests: nf-core/modules

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198 Open 8,925 Closed
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Pull requests list

Swap trust4 to topics size/l
#12516 opened Aug 3, 2026 by SPPearce Contributor • Draft
Swap ultraplex to topics size/m
#12515 opened Aug 3, 2026 by SPPearce Contributor • Draft
chore: bump bwa-mem3 to 0.7.0
#12514 opened Aug 3, 2026 by emmcauley Contributor Loading…
17 tasks
Swap repeatmodeler to topics size/m
#12513 opened Aug 3, 2026 by SPPearce Contributor • Draft
17 tasks
2
Update icountmini suite to v4.0.1 Ready for Review
#12512 opened Aug 3, 2026 by hanalysis Contributor Loading…
2
Swap regtools/junctionextract to topics size/m
#12507 opened Aug 3, 2026 by SPPearce Contributor Loading…
1
Swap repeatmasker to topics size/m
#12506 opened Aug 3, 2026 by SPPearce Contributor • Draft
2
octopusv bump versions + associated logic and test updates Ready for Review
#12503 opened Aug 3, 2026 by manascripts Member Loading…
8 of 17 tasks
1
Decouple orf_class from ORF length across the custom/orf* modules
#12498 opened Aug 3, 2026 by FelixKrueger Contributor Loading…
Update Infrastructural dependencies (major) size/s
#12497 opened Aug 3, 2026 by renovate Bot Loading…
2 tasks
1
updated module: xengsort/index Ready for Review
#12494 opened Aug 2, 2026 by LeonHornich Contributor Loading…
10 of 13 tasks
4
remove setting of bowtie2_index to an empty channel
#12490 opened Aug 1, 2026 by emmanuel-tan Loading…
19 tasks done
1
Update nvcr.io/nvidia/tensorflow Docker tag to v20.12 size/xs
#12488 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Update dependency prettier to v3.9.6 size/xs
#12487 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Migrate amulety to topics gpu module uses GPU help wanted Extra attention is needed
#12481 opened Jul 31, 2026 by atrigila Contributor • Draft Adopt topic channels in all nf-core modules
Migrate universc versions topic container-issue Ready for Review
#12479 opened Jul 31, 2026 by atrigila Contributor Loading… Adopt topic channels in all nf-core modules
Deep mased imp modules
#12472 opened Jul 31, 2026 by SkyLexS Contributor Loading…
10 of 17 tasks
@dialvarezs
2
canvas/germline: Added tests and missing inputs, some cleanup
#12462 opened Jul 29, 2026 by Schmytzi Contributor • Draft
9 of 17 tasks
Update module mobster
#12460 opened Jul 29, 2026 by valerianilucrezia Contributor Loading…
11 of 17 tasks
docs(orfnormalise): correct the GTF contract for rpbp and price Ready for Review
#12453 opened Jul 28, 2026 by pinin4fjords Member Loading…
3
Add a new module - gridss/extractoverlappingfragments ready to merge
#12450 opened Jul 28, 2026 by imsarath Contributor Loading…
13 of 17 tasks
1
@imsarath
28
Update bcftools/consensus/main.nf
#12449 opened Jul 28, 2026 by unholyparrot Loading…
17 tasks
1
Migrate narfmap/hashtable to topic channels
#12445 opened Jul 27, 2026 by xHaMMaDy Contributor Loading…
13 tasks done
1
14
fix(qualimap) Fix for errors in qualimap when memory is set to null
#12441 opened Jul 27, 2026 by bigbigdumdum Loading…
2 of 11 tasks
4
fix #12426 Ready for Review
#12427 opened Jul 24, 2026 by SimHolz Loading…
1
1
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