chore: repoint legacy repository URLs (org migration 2026-09-22)

.aii/config.yaml

@@ -2,9 +2,9 @@
 meta:
   updated: '2026-06-30'
 repo:
-  name: ActiveInferAnts
+  name: Active_InferAnts
   slug: activeinferants
-  full_name: ActiveInferenceInstitute/ActiveInferAnts
+  full_name: ActiveInferenceInstitute/Active_InferAnts
   description: Active Inference models of/for Ants
 institute:
   category: research-software
@@ -18,7 +18,7 @@ ecosystem:
   - repo: ActiveInferenceInstitute/Active_Inference_Ontology
     note: Uses Active Inference Ontology terms.
   links:
-    github: https://github.com/ActiveInferenceInstitute/ActiveInferAnts
+    github: https://github.com/ActiveInferenceInstitute/Active_InferAnts
     website: https://www.activeinference.org
 artifacts:
 - path: README.md

0_CONTEXT/Computer_Languages/CSharp/ActiveInference.csproj

@@ -13,8 +13,8 @@
     <Authors>ActiveInferAnts</Authors>
     <Version>1.0.0</Version>
     <PackageLicenseExpression>MIT</PackageLicenseExpression>
-    <RepositoryUrl>https://github.com/your-repo/ActiveInferAnts</RepositoryUrl>
-    <PackageProjectUrl>https://github.com/your-repo/ActiveInferAnts</PackageProjectUrl>
+    <RepositoryUrl>https://github.com/your-repo/Active_InferAnts</RepositoryUrl>
+    <PackageProjectUrl>https://github.com/your-repo/Active_InferAnts</PackageProjectUrl>
     <PackageTags>active-inference,free-energy,bayesian,artificial-intelligence</PackageTags>
   </PropertyGroup>
 

0_CONTEXT/Computer_Languages/CSharp/README.md

@@ -42,7 +42,7 @@ The implementation uses a complete generative model:
 
 ```bash
 # Navigate to the C# directory
-cd ActiveInferAnts/0_CONTEXT/Computer_Languages/CSharp
+cd Active_InferAnts/0_CONTEXT/Computer_Languages/CSharp
 
 # Restore packages
 dotnet restore

0_CONTEXT/Computer_Languages/Cpp/README.md

@@ -43,7 +43,7 @@ The implementation uses a complete generative model:
 
 ```bash
 # Clone and navigate to the directory
-cd ActiveInferAnts/0_CONTEXT/Computer_Languages/Cpp
+cd Active_InferAnts/0_CONTEXT/Computer_Languages/Cpp
 
 # Create build directory
 mkdir build && cd build

0_CONTEXT/Computer_Languages/Haskell/README.md

@@ -43,7 +43,7 @@ The implementation uses a complete generative model:
 
 ```bash
 # Navigate to the Haskell directory
-cd ActiveInferAnts/0_CONTEXT/Computer_Languages/Haskell
+cd Active_InferAnts/0_CONTEXT/Computer_Languages/Haskell
 
 # Install dependencies and build
 stack build

0_CONTEXT/Computer_Languages/Haskell/package.yaml

@@ -1,6 +1,6 @@
 name: active-inference-haskell
 version: 1.0.0.0
-github: "your-repo/ActiveInferAnts"
+github: "your-repo/Active_InferAnts"
 license: MIT
 author: "ActiveInferAnts"
 maintainer: "ActiveInferAnts"

0_CONTEXT/Computer_Languages/R/README.md

@@ -50,7 +50,7 @@ install.packages("Matrix")
 
 ```bash
 # Navigate to the R directory
-cd ActiveInferAnts/0_CONTEXT/Computer_Languages/R
+cd Active_InferAnts/0_CONTEXT/Computer_Languages/R
 
 # Run single agent demo
 Rscript active_inference.R single-agent

README.md

@@ -98,8 +98,8 @@ Get up and running with Active InferAnts in under 5 minutes:
 ### Option 1: Run All Language Implementations
 ```bash
 # Clone the repository
-git clone https://github.com/ActiveInferenceInstitute/ActiveInferAnts.git
-cd ActiveInferAnts
+git clone https://github.com/ActiveInferenceInstitute/Active_InferAnts.git
+cd Active_InferAnts
 
 # Set up environment and run all implementations
 python3 0_CONTEXT/Computer_Languages/master_controller.py setup
@@ -151,8 +151,8 @@ python3 0_CONTEXT/Computer_Languages/master_controller.py status
 
 ```bash
 # Clone the repository
-git clone https://github.com/ActiveInferenceInstitute/ActiveInferAnts.git
-cd ActiveInferAnts
+git clone https://github.com/ActiveInferenceInstitute/Active_InferAnts.git
+cd Active_InferAnts
 
 # Install Python dependencies
 pip install -r requirements.txt
@@ -677,9 +677,9 @@ tail -f 0_CONTEXT/Computer_Languages/test_results/test_suite.log
 
 ### Getting Help
 
-1. **Check Existing Issues**: Search [GitHub Issues](https://github.com/ActiveInferenceInstitute/ActiveInferAnts/issues)
+1. **Check Existing Issues**: Search [GitHub Issues](https://github.com/ActiveInferenceInstitute/Active_InferAnts/issues)
 2. **Run Diagnostics**: Use the built-in status dashboard
-3. **Review Documentation**: Check [detailed docs](https://github.com/ActiveInferenceInstitute/ActiveInferAnts/wiki)
+3. **Review Documentation**: Check [detailed docs](https://github.com/ActiveInferenceInstitute/Active_InferAnts/wiki)
 4. **Community Support**: Join our [Discord community](https://discord.gg/active-inference)
 
 ## 🤝 Contributing
@@ -688,8 +688,8 @@ We welcome contributions from researchers, developers, and enthusiasts! Here's h
 
 ### Ways to Contribute
 
-- **🐛 Bug Reports**: Found a bug? [Open an issue](https://github.com/ActiveInferenceInstitute/ActiveInferAnts/issues/new?template=bug_report.md)
-- **💡 Feature Requests**: Have an idea? [Submit a feature request](https://github.com/ActiveInferenceInstitute/ActiveInferAnts/issues/new?template=feature_request.md)
+- **🐛 Bug Reports**: Found a bug? [Open an issue](https://github.com/ActiveInferenceInstitute/Active_InferAnts/issues/new?template=bug_report.md)
+- **💡 Feature Requests**: Have an idea? [Submit a feature request](https://github.com/ActiveInferenceInstitute/Active_InferAnts/issues/new?template=feature_request.md)
 - **🔧 Code Contributions**: Ready to code? See our development workflow below
 - **📚 Documentation**: Help improve documentation and tutorials
 - **🧪 Testing**: Add test cases or improve test coverage
@@ -699,8 +699,8 @@ We welcome contributions from researchers, developers, and enthusiasts! Here's h
 
 1. **Fork and Clone**
    ```bash
-   git clone https://github.com/your-username/ActiveInferAnts.git
-   cd ActiveInferAnts
+   git clone https://github.com/your-username/Active_InferAnts.git
+   cd Active_InferAnts
    git checkout -b feature/your-amazing-feature
    ```
 
@@ -735,7 +735,7 @@ We welcome contributions from researchers, developers, and enthusiasts! Here's h
    git commit -m "feat: add amazing new feature"
    git push origin feature/your-amazing-feature
    ```
-   Then create a [pull request](https://github.com/ActiveInferenceInstitute/ActiveInferAnts/pulls)
+   Then create a [pull request](https://github.com/ActiveInferenceInstitute/Active_InferAnts/pulls)
 
 ### Contribution Guidelines
 
@@ -756,7 +756,7 @@ Contributors are recognized through:
 
 ### Communication
 
-- **Discussions**: Join [GitHub Discussions](https://github.com/ActiveInferenceInstitute/ActiveInferAnts/discussions) for questions
+- **Discussions**: Join [GitHub Discussions](https://github.com/ActiveInferenceInstitute/Active_InferAnts/discussions) for questions
 - **Discord**: Real-time chat in our [Discord community](https://discord.gg/active-inference)
 - **Newsletter**: Subscribe for updates and research highlights
 
@@ -840,8 +840,8 @@ This project has been supported by:
 ### Get In Touch
 
 - **📧 Email**: [blanket@activeinference.institute](mailto:blanket@activeinference.institute)
-- **🐛 Issues**: [GitHub Issues](https://github.com/ActiveInferenceInstitute/ActiveInferAnts/issues)
-- **💬 Discussions**: [GitHub Discussions](https://github.com/ActiveInferenceInstitute/ActiveInferAnts/discussions)
+- **🐛 Issues**: [GitHub Issues](https://github.com/ActiveInferenceInstitute/Active_InferAnts/issues)
+- **💬 Discussions**: [GitHub Discussions](https://github.com/ActiveInferenceInstitute/Active_InferAnts/discussions)
 - **💻 Discord**: [Active Inference Community](https://discord.gg/active-inference)
 - **📱 Twitter**: [@ActiveInferAnts](https://twitter.com/ActiveInferAnts)
 - **🔬 Research**: [Active Inference Institute](https://activeinference.institute)

docs/guides/getting_started.md

@@ -12,8 +12,8 @@ The installable `active_infer_ants` package is the supported entry point:
 
 ```bash
 # Clone the repository
-git clone https://github.com/ActiveInferenceInstitute/ActiveInferAnts.git
-cd ActiveInferAnts
+git clone https://github.com/ActiveInferenceInstitute/Active_InferAnts.git
+cd Active_InferAnts
 
 # Install Python dependencies
 pip install -r requirements.txt

mkdocs.yml

@@ -1,5 +1,5 @@
 site_name: Active InferAnts
-repo_url: https://github.com/ActiveInferenceInstitute/ActiveInferAnts
+repo_url: https://github.com/ActiveInferenceInstitute/Active_InferAnts
 theme:
   name: material
 nav: