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vanvalenlab

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  1. deepcell-label deepcell-label Public

    Cloud-based data annotation tools for biological images

    JavaScript 84 16

  2. kiosk-console kiosk-console Public

    DeepCell Kiosk Distribution for Kubernetes on GKE and AWS

    Shell 37 7

  3. deepcell-applications deepcell-applications Public

    Run DeepCell Applications

    Python 10 5

  4. deepcell-tf deepcell-tf Public

    Deep Learning Library for Single Cell Analysis

    Python 473 109

Repositories

Showing 10 of 39 repositories
  • torch-mesmer Public

    pytorch implementation of mesmer

    vanvalenlab/torch-mesmer’s past year of commit activity
    Python 1 1 16 1 Updated Feb 9, 2026
  • cellsam-demo-site Public

    Source code for cellsam.deepcell.org

    vanvalenlab/cellsam-demo-site’s past year of commit activity
    TypeScript 0 1 2 20 Updated Feb 9, 2026
  • deepcell-label-utils Public

    Utilities for spatial cell labels

    vanvalenlab/deepcell-label-utils’s past year of commit activity
    Python 0 0 0 1 Updated Dec 22, 2025
  • DeepCellTypes-2024_Wang_et_al Public
    vanvalenlab/DeepCellTypes-2024_Wang_et_al’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 2, 2025
  • cellSAM Public

    Codebase for "A Foundation Model for Cell Segmentation"

    vanvalenlab/cellSAM’s past year of commit activity
    Python 175 33 31 7 Updated Nov 11, 2025
  • sfk_dms_paper Public

    Changhua Yu's code for SFK DMS paper

    vanvalenlab/sfk_dms_paper’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 7, 2025
  • deepcell-spots Public

    Deep Learning Library for Spot Detection

    vanvalenlab/deepcell-spots’s past year of commit activity
    Python 21 5 5 0 Updated Oct 9, 2025
  • deepcell-types Public
    vanvalenlab/deepcell-types’s past year of commit activity
    Python 8 4 6 1 Updated Sep 9, 2025
  • intro-to-deepcell Public archive

    An introduction to deepcell and deep learning

    vanvalenlab/intro-to-deepcell’s past year of commit activity
    Jupyter Notebook 156 27 8 0 Updated Oct 21, 2024
  • deepcell-tf Public

    Deep Learning Library for Single Cell Analysis

    vanvalenlab/deepcell-tf’s past year of commit activity
    Python 473 109 50 (1 issue needs help) 2 Updated Aug 30, 2024
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