bedtools - the swiss army knife for genome arithmetic
IQ-TREE software version 2: phylogenetics by maximum likelihood
Experiments with expanded ensembles to explore chemical space
Solvation Structure and Thermodynamic Mapping
A pocket volume analyzer for use in protein modeling.
macromolecular crystallography library and utilities
Python implementation of the multistate Bennett acceptance ratio (MBAR)
Protein and nucleic acid validation service
A Python Package for Protein Dynamics Analysis
The Open Free Energy toolkit
Dynamic pharmacophore modeling of molecular interactions
Identification of Protein-Ligand Binding Sites using dipolar EPR data
Powerful, efficient particle trajectory analysis in scientific Python.
Biomolecular simulation trajectory/data analysis.
A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.
A comprehensive library for computational molecular biology
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
Python interface of cpptraj
Computational Crystallography Toolbox
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
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