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feat: provide envvars set for passing them to environments/containers #65

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Merged
johanneskoester merged 1 commit into from
Sep 7, 2026
+3 −0
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feat: provide envvars set for passing them to environments/containers #65

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3 changes: 3 additions & 0 deletions snakemake_interface_software_deployment_plugins/__init__.py
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Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
from collections.abc import Set
import tempfile
import os

Expand Down Expand Up @@ -203,6 +204,7 @@ def __init__(
settings,
shell_executable: ShellExecutable,
mountpoints: List[Path],
envvars: Set[str],
tempdir: Path,
cache_prefix: Path,
deployment_prefix: Path,
Expand All @@ -214,6 +216,7 @@ def __init__(
self.settings = settings
self.shell_executable = shell_executable
self.mountpoints = [mountpoint.absolute() for mountpoint in mountpoints]
self.envvars = envvars
self.tempdir = tempdir
self._deployment_prefix: Path = deployment_prefix
self._cache_prefix: Path = cache_prefix
Expand Down
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