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smithlabcode / abismal Public

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Just adding missing headers#100

Merged

andrewdavidsmith merged 14 commits intomastersmithlabcode/abismal:masterfrom

linting-headerssmithlabcode/abismal:linting-headersCopy head branch name to clipboard

Jan 31, 2026

Conversation Commits14 (14)Checks Files changed

Merged

Just adding missing headers#100
andrewdavidsmith merged 14 commits intomasterfrom
linting-headers

Commits

Commits on Jan 2, 2026

src/AbismalIndex.hcpp: changes to reflect moving dna_four_bit into dna_four_bit_bisulfite
andrewdavidsmith
committed
src/abismal.cpp: changes to reflect moving dna_four_bit into dna_four_bit_bisulfite
andrewdavidsmith
committed
src/AbismalAlign.hpp: count_deletions and count_insertions collapsed into count_ops
andrewdavidsmith
committed
src/dna_four_bit_bisulfite.hpp: moved in the dna_four_bit from smithlab_cpp
andrewdavidsmith
committed

Commits on Jan 4, 2026

src/simreads.hpp: linting
andrewdavidsmith
committed
src/common.hpp: linting
andrewdavidsmith
committed
src/dna_four_bit_bisulfite.hpp: linting
andrewdavidsmith
committed
src/abismalidx.hpp: linting
andrewdavidsmith
committed
src/abismal.hpp: linting
andrewdavidsmith
committed
src/abismal.cpp: linting
andrewdavidsmith
committed
src/AbismalIndex.hpp: linting
andrewdavidsmith
committed
src/AbismalAlign.hpp: linting
andrewdavidsmith
committed
src/AbismalIndex.cpp: linting
andrewdavidsmith
committed
.clang-tidy: adding rules to lint headers and filter out headers to ignore
andrewdavidsmith
committed

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