fix(autolayout): rescue new notes from blocks they were created on top of

apps/sim/lib/copilot/tools/server/workflow/edit-workflow/index.ts

@@ -336,6 +336,7 @@ export const editWorkflowServerTool: BaseServerTool<EditWorkflowParams, unknown>
           shiftSourceBlockIds,
           horizontalSpacing: DEFAULT_HORIZONTAL_SPACING,
           verticalSpacing: DEFAULT_VERTICAL_SPACING,
+          previousBlocks: workflowState.blocks,
         })
       } catch (error) {
         logger.warn('Targeted autolayout failed, using default positions', {

apps/sim/lib/workflows/autolayout/targeted.test.ts

@@ -458,4 +458,65 @@ describe('applyTargetedLayout', () => {
       result.loop.position.x + loopMetrics.width
     )
   })
+
+  it('relocates a newly added note off a block it was created on top of', () => {
+    // A copilot note is born at the (0,0) placeholder, and a fresh workflow's
+    // start block lives at (0,0) too. The pre-edit snapshot does not contain
+    // the note, so the overlap counts as introduced by this edit and the note
+    // must be moved to the stack below the flow, not preserved as intentional.
+    const blocks = {
+      start: createBlock('start', { position: { x: 0, y: 0 } }),
+      note: createBlock('note', {
+        type: 'note',
+        position: { x: 0, y: 0 },
+        subBlocks: {
+          content: { id: 'content', type: 'long-input', value: 'Explains the workflow' },
+        },
+      }),
+    }
+
+    const result = applyTargetedLayout(blocks, [], {
+      changedBlockIds: ['note'],
+      previousBlocks: { start: blocks.start },
+    })
+
+    const startMetrics = getBlockMetrics(result.start)
+    expect(result.start.position).toEqual({ x: 0, y: 0 })
+    expect(result.note.position.y).toBeGreaterThanOrEqual(
+      result.start.position.y + startMetrics.height + DEFAULT_VERTICAL_SPACING
+    )
+  })
+
+  it('preserves a pre-existing note arrangement when an unrelated block is laid out', () => {
+    const blocks = {
+      start: createBlock('start', { position: { x: 0, y: 0 } }),
+      note: createBlock('note', {
+        type: 'note',
+        position: { x: 60, y: 10 },
+        subBlocks: {
+          content: { id: 'content', type: 'long-input', value: 'Deliberately parked here' },
+        },
+      }),
+      added: createBlock('added', { position: { x: 0, y: 0 } }),
+    }
+
+    const edges: Edge[] = [{ id: 'e1', source: 'start', target: 'added' }]
+
+    const result = applyTargetedLayout(blocks, edges, {
+      changedBlockIds: ['added'],
+      previousBlocks: {
+        start: createBlock('start', { position: { x: 0, y: 0 } }),
+        note: createBlock('note', {
+          type: 'note',
+          position: { x: 60, y: 10 },
+          subBlocks: {
+            content: { id: 'content', type: 'long-input', value: 'Deliberately parked here' },
+          },
+        }),
+      },
+    })
+
+    expect(result.note.position).toEqual({ x: 60, y: 10 })
+    expect(result.added.position.x).toBeGreaterThan(result.start.position.x)
+  })
 })

apps/sim/lib/workflows/autolayout/targeted.ts

@@ -35,6 +35,15 @@ export interface TargetedLayoutOptions extends LayoutOptions {
   shiftSourceBlockIds?: string[]
   verticalSpacing?: number
   horizontalSpacing?: number
+  /**
+   * Pre-edit block snapshot used to judge whether a note's overlap with a block
+   * is a pre-existing arrangement (preserved) or was introduced by the edit
+   * being laid out (relocated). Without it, the post-edit input blocks serve as
+   * the baseline — which contains newly added notes at their `(0,0)` placeholder,
+   * so a new note dropped onto a block at the origin (e.g. a fresh workflow's
+   * start block) reads as intentional and is never rescued.
+   */
+  previousBlocks?: Record<string, BlockState>
 }
 
 /**
@@ -53,6 +62,7 @@ export function applyTargetedLayout(
     verticalSpacing = DEFAULT_VERTICAL_SPACING,
     horizontalSpacing = DEFAULT_HORIZONTAL_SPACING,
     gridSize,
+    previousBlocks = blocks,
   } = options
 
   if (
@@ -135,8 +145,10 @@ export function applyTargetedLayout(
   )
 
   // Relocate notes only where this pass introduced an overlap, comparing against
-  // the original positions so pre-existing note arrangements are preserved.
-  resolveNoteOverlaps(blocksCopy, verticalSpacing, { previousBlocks: blocks })
+  // the baseline positions so pre-existing note arrangements are preserved. A
+  // note absent from the baseline (newly added by this edit) is always eligible
+  // for relocation.
+  resolveNoteOverlaps(blocksCopy, verticalSpacing, { previousBlocks })
 
   return blocksCopy
 }

apps/sim/lib/workflows/diff/diff-engine.ts

@@ -490,6 +490,7 @@ export class WorkflowDiffEngine {
             shiftSourceBlockIds,
             horizontalSpacing: DEFAULT_HORIZONTAL_SPACING,
             verticalSpacing: DEFAULT_VERTICAL_SPACING,
+            previousBlocks: mergedBaseline.blocks,
           })
 
           Object.entries(layoutedBlocks).forEach(([id, layoutBlock]) => {