Long chr region#2009
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See samtools/hts-specs#655 When we've had to split long chromosomes up due to being >2Gbp long, these header fields provide a mechanism to report the originating chromosome and location within it. This PR adds support for these in the iterator interface, so a range query can use the original chromosome name and coordinates, expanding to one or more sub-queries in the split chromosomes. The resulting returned data is not remapped to the original names / positions, as this is a substantially bigger task. It may be dealt with later in a follow-up PR. Signed-off-by: James Bonfield <jkb@sanger.ac.uk>
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A test bed for samtools/hts-specs#655