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build(deps): bump snakemake from 9.25.2 to 9.26.1 - #240

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build(deps): bump snakemake from 9.25.2 to 9.26.1#240
dependabot[bot] wants to merge 1 commit into
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dependabot/uv/snakemake-9.26.1

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Bumps snakemake from 9.25.2 to 9.26.1.

Release notes

Sourced from snakemake's releases.

v9.26.1

9.26.1 (2026-08-27)

Bug Fixes

v9.26.0

9.26.0 (2026-08-26)

Features

  • output workflow total elapsed time to log (#4279) (2dd3f2f)

Bug Fixes

  • don't delete local storage copies of currently running jobs (#4284) (49cc1d5)
  • preserve flags when formatting _IOFile (#4286) (4cbb7a6)
  • Snakemake sometimes checks the wrong copy of an output file's info, causing spurious reruns (#4285) (66ee0ac)
  • update shadow directory handling and logging for incomplete jobs (#4288) (3080698)
Changelog

Sourced from snakemake's changelog.

9.26.1 (2026-08-27)

Bug Fixes

9.26.0 (2026-08-26)

Features

  • output workflow total elapsed time to log (#4279) (2dd3f2f)

Bug Fixes

  • don't delete local storage copies of currently running jobs (#4284) (49cc1d5)
  • preserve flags when formatting _IOFile (#4286) (4cbb7a6)
  • Snakemake sometimes checks the wrong copy of an output file's info, causing spurious reruns (#4285) (66ee0ac)
  • update shadow directory handling and logging for incomplete jobs (#4288) (3080698)
Commits
  • 6d6180e chore(main): release 9.26.1 (#4297)
  • 3519bed fix: missing import (#4296)
  • ee8769f chore(main): release 9.26.0 (#4292)
  • 2dd3f2f feat: output workflow total elapsed time to log (#4279)
  • 4cbb7a6 fix: preserve flags when formatting _IOFile (#4286)
  • 66ee0ac fix: Snakemake sometimes checks the wrong copy of an output file's info, caus...
  • 49cc1d5 fix: don't delete local storage copies of currently running jobs (#4284)
  • 3080698 fix: update shadow directory handling and logging for incomplete jobs (#4288)
  • See full diff in compare view

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Bumps [snakemake](https://github.com/snakemake/snakemake) from 9.25.2 to 9.26.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v9.25.2...v9.26.1)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-version: 9.26.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added the dependencies Dependency updates label Sep 2, 2026
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