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QuaDBio Lab

Quantitative Developmental Biology Lab

Popular repositories Loading

  1. scRNAseq_analysis_vignette scRNAseq_analysis_vignette Public

    Tutorial for scRNA-seq data analysis beginners using R

    284 85

  2. Pando Pando Public

    Multiome GRN inference.

    R 146 26

  3. scMultiome_analysis_vignette scMultiome_analysis_vignette Public

    Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis

    84 19

  4. VoxHunt VoxHunt Public

    VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps

    HTML 50 6

  5. RNAseq_tutorial RNAseq_tutorial Public

    50 16

  6. simspec simspec Public

    Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)

    R 42 3

Repositories

Showing 10 of 68 repositories
  • scembed Public

    Run embedding comparisons for single-cell data

    quadbio/scembed's past year of commit activity
    Python 6 MIT 2 0 1 Updated Nov 3, 2026
  • slurm_sweep Public

    Hyperparameter sweeps on SLURM clusters

    quadbio/slurm_sweep's past year of commit activity
    Python 6 MIT 2 1 0 Updated Nov 3, 2026
  • Palantir Public Forked from dpeerlab/Palantir

    Single cell trajectory detection

    quadbio/Palantir's past year of commit activity
    Jupyter Notebook 0 MIT 68 2 0 Updated Nov 3, 2026
  • cell-annotator Public

    Automatically annotate cell types, consistently across samples.

    quadbio/cell-annotator's past year of commit activity
    Python 30 MIT 2 4 2 Updated Nov 2, 2026
  • cellmapper Public

    k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.

    quadbio/cellmapper's past year of commit activity
    Python 18 MIT 4 6 2 Updated Nov 2, 2026
  • simvi Public Forked from KlugerLab/SIMVI
    quadbio/simvi's past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 3 0 0 Updated Oct 30, 2026
  • sci-figures Public

    Claude Code plugin: Nature-style research figures and legends, with the scifig matplotlib helper package.

    quadbio/sci-figures's past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 28, 2026
  • Pando Public

    Multiome GRN inference.

    quadbio/Pando's past year of commit activity
    R 146 MIT 26 25 0 Updated Oct 26, 2026
  • analysis-workflow Public

    Claude Code plugin: conventions, guard hooks and a small package for analysis repos where humans (notebooks) and agents (scripts) work side by side.

    quadbio/analysis-workflow's past year of commit activity
    Python 0 MIT 0 3 0 Updated Oct 26, 2026
  • cirrocumulus Public Forked from lilab-bcb/cirrocumulus

    Bring your single-cell data to life

    quadbio/cirrocumulus's past year of commit activity
    JavaScript 0 BSD-3-Clause 19 0 0 Updated Oct 26, 2026
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