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new(github.com/chrchang/plink-ng): plink-ng 2.0.0-a.7.1#13498

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new(github.com/chrchang/plink-ng): plink-ng 2.0.0-a.7.1#13498
tannevaled wants to merge 1 commit into
pkgxdev:mainfrom
tannevaled:new/plink2

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Adds PLINK 2 (plink2) — whole-genome association analysis. C++ (the 2.0/ subtree). The committed 2.0/build_dynamic/Makefile keeps NO_AVX2/NO_SSE42 on (no x86 -m flags; SSE/AVX2 intrinsics resolve via the bundled SIMDe on arm64 — portable, no -march=native); bundled zstd/libdeflate/mini-gmp compile in-tree. Deps: zlib + openblas + netlib lapack (lapacke); gcc 14 build + libstdcxx runtime on linux (darwin = Apple clang). Verified linux/arm64: plink2 --version -> 2.0.0-a.7.1, and --vcf … --freq gives ALT freq 0.5 on a 4-sample fixture.

@tannevaled tannevaled force-pushed the new/plink2 branch 3 times, most recently from 4e9617f to a0d2037 Compare June 22, 2026 19:04
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