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@VEuPathDB VEuPathDB Bioinformatics Resource Center

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    361 repositories

    • FgpUtil

      Public
      Java
      •
      Apache License 2.0
      •2•0•2•2•Updated Jan 6, 2026Jan 6, 2026

    • EbrcWebsiteCommon

      Public
      Perl
      •
      Apache License 2.0
      •3•3•9•4•Updated Jan 6, 2026Jan 6, 2026

    • study-dealer-nextflow

      Public
      Deals studies to the wrangler
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • WDK

      Public
      Java
      •
      Apache License 2.0
      •4•1•13•7•Updated Jan 6, 2026Jan 6, 2026

    • install

      Public
      Shell
      •
      Apache License 2.0
      •2•0•1•21•Updated Jan 6, 2026Jan 6, 2026

    • ApiCommonWebService

      Public
      Java
      •
      Apache License 2.0
      •1•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • conifer

      Public
      Configuration management tool for VEuPathDB GUS-based websites
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • web-monorepo

      Public
      A monorepo that contains all frontend code for VEuPathDB websites
      TypeScript
      •
      Apache License 2.0
      •0•3•252•31•Updated Jan 6, 2026Jan 6, 2026

    • StaticContent

      Public
      HTML
      •
      Apache License 2.0
      •6•0•0•4•Updated Jan 6, 2026Jan 6, 2026

    • ApiCommonWorkflow

      Public
      Perl
      •
      Apache License 2.0
      •1•0•0•1•Updated Jan 6, 2026Jan 6, 2026

    • puppet-pubcrawler

      Public
      Puppet
      •2•0•0•1•Updated Jan 5, 2026Jan 5, 2026

    • SiteSearchData

      Public
      WDK Model and other code needed to run a WDK and generate reports to make JSON files to index in solr
      Python
      •
      Apache License 2.0
      •0•1•10•2•Updated Jan 5, 2026Jan 5, 2026

    • vdi-tests

      Public
      Test harnesses and data for VDI
      Makefile
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • vdi-service

      Public
      VEuPathDB Dataset Installer
      vdi
      Kotlin
      •
      Apache License 2.0
      •0•0•27•1•Updated Jan 5, 2026Jan 5, 2026

    • orthoFinder-nextflow

      Public
      orthoFinder Nextflow workflow
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • ApiCommonModel

      Public
      Perl
      •
      Apache License 2.0
      •0•1•0•11•Updated Jan 5, 2026Jan 5, 2026

    • WSF

      Public
      Java
      •
      Apache License 2.0
      •2•0•0•1•Updated Jan 5, 2026Jan 5, 2026

    • CBIL

      Public
      Perl
      •
      Apache License 2.0
      •3•0•0•1•Updated Jan 5, 2026Jan 5, 2026

    • ReFlow

      Public
      Perl
      •
      Apache License 2.0
      •2•1•0•1•Updated Jan 5, 2026Jan 5, 2026

    • EuPathGalaxy

      Public
      Perl
      •
      Apache License 2.0
      •0•0•0•1•Updated Jan 5, 2026Jan 5, 2026

    • OAuth2Server

      Public
      Java
      •
      Apache License 2.0
      •0•0•1•2•Updated Jan 5, 2026Jan 5, 2026

    • EbrcModelCommon

      Public
      Java
      •
      Apache License 2.0
      •0•1•2•3•Updated Jan 5, 2026Jan 5, 2026

    • EbrcWebSvcCommon

      Public
      Java
      •
      Apache License 2.0
      •2•0•2•1•Updated Jan 5, 2026Jan 5, 2026

    • JBrowse

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•1•14•Updated Jan 5, 2026Jan 5, 2026

    • ApiCommonWebsite

      Public
      Perl
      •
      Apache License 2.0
      •1•3•4•10•Updated Jan 5, 2026Jan 5, 2026

    • expression-shepherd

      Public
      Wrangling our expression data with gpt-4o
      HTML
      •0•0•1•2•Updated Jan 2, 2026Jan 2, 2026

    • jbrowse-plugin-subtrack-renderer

      Public
      JBrowse2 Subtracks (and eventually Ortholog Shading)
      0•0•0•1•Updated Jan 1, 2026Jan 1, 2026

    • jbrowse-plugin-diamond-glyph

      Public
      Diamond Glph for SNPs and other short features
      Apache License 2.0
      •0•0•0•1•Updated Dec 31, 2025Dec 31, 2025

    • ApiCommonData

      Public
      Perl
      •
      Apache License 2.0
      •3•3•0•1•Updated Dec 29, 2025Dec 29, 2025

    • vdi-plugin-wrangler

      Public
      General purpose VDI plugin to process files for EDA loading using the study-wrangler
      R
      •
      Apache License 2.0
      •0•0•12•2•Updated Dec 24, 2025Dec 24, 2025