prep(release): finalize CodeClone 2.1.0a1 pre-release#51

Merged

orenlab merged 18 commits into

mainfrom

fix/prerelease-2.1.0a1

Jul 9, 2026

Commits on Jul 8, 2026

fix(mcp): unify compare_runs params to before_run_id/after_run_id
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perf(analysis): collapse relationship walk into single pass
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chore(obs): add module_passes subphase timing counters
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perf(analysis): defer reachability facts to handler-node replay
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fix(docs): recreate docs/README-pypi.md for PyPI long description
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fix(docs): repoint dead docs-site links in root README to current IA
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fix(claude-code): add plugin version 2.1.0a1 and repoint docs links
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fix(cursor): mirror core version 2.1.0a1 and repoint docs links
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fix(codex): repoint dead docs-site links to current IA
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fix(claude-desktop): mirror core version 2.1.0a1 and repoint docs links
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fix(vscode): repoint dead docs-site links to current IA
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fix(docs): repoint dead docs-site link in GitHub Action README
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chore(docs): update pre-release docs
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test(plugins): assert plugin manifest versions match pyproject.toml and dedupe manifest version checks via shared helper
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