feat: P1 bugfixes, security hardening, and plan system improvements#44

Merged

nigel-dev merged 13 commits intomainfrom

Feb 13, 2026

Commits on Feb 13, 2026

feat: support custom base branch for mc_launch, mc_plan, and all git workflow tools
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fix(security): sanitize worktreeSetup.commands before shell execution
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fix: distinguish tmux errors from dead panes in isPaneRunning
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feat: plan jobs branch from integration HEAD for code visibility across dependencies
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fix: scope plan job branch names to prevent collisions with standalone jobs
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fix: update integration branching test to match plan-scoped branch naming
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fix: prevent reconciler from silently dropping state transitions
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fix: sync against local base branch by default instead of upstream
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fix: respect omo.defaultMode config when launching plan jobs
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fix(test): mock isTmuxHealthy in integration test for CI compatibility
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fix(test): mock isTmuxHealthy in unit test resumePlan for CI compatibility
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fix(test): skip tmux-dependent tests when tmux server is unavailable
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fix(test): skip tmux-dependent tests in tmux.test.ts when no tmux server
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