Bump the compatible-python group across 1 directory with 2 updates

[dependabot]

Bumps the compatible-python group with 2 updates in the /.learn_environment directory: gitpython and numpy.

Updates gitpython from 3.1.59 to 3.1.62

Release notes

Sourced from gitpython's releases.

3.1.62

What's Changed

• prepare next release by @​Byron in gitpython-developers/GitPython#2222
• Keep bare-repository worktrees non-bare by @​Byron in gitpython-developers/GitPython#2224
• Reject unsafe submodule checkout paths by @​Byron in gitpython-developers/GitPython#2225
• build(deps): bump https://github.com/astral-sh/ruff-pre-commit from v0.16.0 to 0.16.5 in the pre-commit group by @​dependabot[bot] in gitpython-developers/GitPython#2226
• fix: join backslash line continuations when reading config values by @​nkbeast in gitpython-developers/GitPython#2227

New Contributors

• @​nkbeast made their first contribution in gitpython-developers/GitPython#2227

Full Changelog: gitpython-developers/GitPython@3.1.61...3.1.62

3.1.61

Fix accidental removal of exploitable regex in Actor by bringing it back, and deprecating it.

What's Changed

• Fix repository discovery precedence by @​Byron in gitpython-developers/GitPython#2218
• fix: wait for git daemon to listen before connecting by @​Vogtinator in gitpython-developers/GitPython#2219
• fix: restore Actor.name_email_regex by @​Byron in gitpython-developers/GitPython#2221

New Contributors

• @​Vogtinator made their first contribution in gitpython-developers/GitPython#2219

Full Changelog: gitpython-developers/GitPython@3.1.60...3.1.61

3.1.60 Security

What's Changed

• prepare changelog prior to release by @​Byron in gitpython-developers/GitPython#2212
• Preserve Git config escape semantics by @​Byron in gitpython-developers/GitPython#2213
• Harden diff path and actor identity parsing by @​Byron in gitpython-developers/GitPython#2215
• Require explicit opt-in for filesystem diffs by @​Byron in gitpython-developers/GitPython#2217

Full Changelog: gitpython-developers/GitPython@3.1.59...3.1.60

Commits

• db47516 prepare new release
• 10ec385 get better commit messages from agents
• b754897 test: cover subdirectory discovery and pathspec commands in bare-repo worktre...
• 9ebf8b6 Merge pull request #2227 from nkbeast/fix-config-backslash-continuation
• a15f791 fix: parse joined config values as a whole
• 60dd946 fix: ignore continuation markers in config comments
• 075a664 fix: join backslash line continuations when reading config values
• 62d1e2f Merge pull request #2226 from gitpython-developers/dependabot/pre_commit/pre-...
• 23d0e92 build(deps): bump https://github.com/astral-sh/ruff-pre-commit
• 8a14adc Merge pull request #2225 from gitpython-developers/submodule-path-hardening
• Additional commits viewable in compare view

Updates numpy from 2.5.2 to 2.5.3

Release notes

Sourced from numpy's releases.

v2.5.3 (Sep 6, 2026)

NumPy 2.5.3 Release Notes

The NumPy 2.5.3 is a patch release that fixes bugs discovered after the 2.5.2 release. Apart from the usual bug and maintenance work, there are a number of StringDType related fixes for problems discovered during the ongoing string work in the main branch.

This release supports Python versions 3.12-3.15

Changes

• Casting a fixed-width byte string array (np.bytes_) to StringDType now raises TypeError when the bytes are not valid UTF-8. Previously the invalid bytes were stored as-is and later caused undefined behavior in string operations.

  (gh-32296)

• MaskedArray._fill_value would become stale when ufuncs that change dtype left the result holding a fill_value typed for the old dtype. The mismatch was silent until something later called _check_fill_value, such as .view(), and then a TypeError would be raised. Now, when the copied fill_value is no longer valid for the new dtype, fall back to the default fill_value for that dtype instead of propagating the stale value. This may raise a ComplexWarning if the fill_value is complex and the new dtype is real.

  (gh-32423)

Contributors

A total of 9 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

• Charles Harris
• Iason Krommydas
• James Davies +
• Joren Hammudoglu
• Maanas Arora
• Matti Picus
• Nathan Goldbaum
• Shikhar Goel +
• Yeonho Kim +

Pull requests merged

A total of 27 pull requests were merged for this release.

• #32235: MAINT: Prepare 2.5.x for further development

... (truncated)

Commits

• dd88c0c Merge pull request #32511 from charris/prepare-2.5.3
• edcac6a REL: Prepare for the NumPy 2.5.3 release
• fd4d908 Merge pull request #32509 from charris/backport-32496
• 65bb1da BUG: fix crash in ufunc.resolve_dtypes with a Python scalar type (#32496)
• 294956e Merge pull request #32506 from charris/backport-32503
• 26428d9 DOC: fix scipy docs links in intersphinx mapping (#32507)
• 5fab1cb DOC: use static scipy doc site for intershpinx (#32503)
• 7beed2f Merge pull request #32481 from ngoldbaum/stringdtype-backport
• 8972f70 Merge pull request #32478 from charris/backport-32466
• ab1b589 Merge pull request #32477 from charris/backport-32423
• Additional commits viewable in compare view

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Summary by cubic

Updates GitPython to 3.1.62 and numpy to 2.5.3 in the .learn_environment directory. The GitPython release includes security hardening for submodule checkout paths and config parsing, while numpy fixes several bugs, including issues with StringDType.

^{Written for commit b669e24. Summary will update on new commits.}

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