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@nadeemlab

Nadeem Lab @ Memorial Sloan Kettering Cancer Center

Integrative Biomedical Data Analysis Lab (macro: radiology/surgery + meso: pathology + micro: molecular)

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  1. DeepLIIF DeepLIIF Public

    Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

    Python 241 88

  2. CEP CEP Public

    Computational Endoscopy Platform (advanced deep learning toolset for analyzing endoscopy videos) [MICCAI'25, MICCAI'22, MICCAI'21, ISBI'21, CVPR'20]

    Python 82 11

  3. Physics-ArX Physics-ArX Public

    Physics-based data augmentation library for quantifying CT and CBCT images in radiotherapy [PMB'23, PMB'21, Medical Physics'21, AAPM'21]

    Python 73 18

  4. DoseRTX DoseRTX Public

    Domain knowledge driven 3D radiation dose prediction [PMB'22]

    Python 51 10

  5. ImPartial ImPartial Public

    Interactive deep learning whole-cell segmentation and thresholding using partial annotations

    Jupyter Notebook 42 3

  6. smprofiler smprofiler Public

    Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)

    Python 23 2

Repositories

Showing 9 of 9 repositories
  • smprofiler Public

    Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)

    nadeemlab/smprofiler’s past year of commit activity
    Python 23 2 8 3 Updated Mar 24, 2026
  • DoseRTX Public

    Domain knowledge driven 3D radiation dose prediction [PMB'22]

    nadeemlab/DoseRTX’s past year of commit activity
    Python 51 10 0 0 Updated Mar 12, 2026
  • DeepLIIF Public

    Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

    nadeemlab/DeepLIIF’s past year of commit activity
    Python 241 88 0 1 Updated Mar 7, 2026
  • ImPartial Public

    Interactive deep learning whole-cell segmentation and thresholding using partial annotations

    nadeemlab/ImPartial’s past year of commit activity
    Jupyter Notebook 42 3 1 0 Updated Jan 1, 2026
  • CEP Public

    Computational Endoscopy Platform (advanced deep learning toolset for analyzing endoscopy videos) [MICCAI'25, MICCAI'22, MICCAI'21, ISBI'21, CVPR'20]

    nadeemlab/CEP’s past year of commit activity
    Python 82 11 0 0 Updated Jun 29, 2025
  • SeqX2Y Public

    Sequence-to-sequence image and contour prediction library for longitudinal datasets [PMB'23]

    nadeemlab/SeqX2Y’s past year of commit activity
    Python 20 7 0 0 Updated Apr 8, 2024
  • Physics-ArX Public

    Physics-based data augmentation library for quantifying CT and CBCT images in radiotherapy [PMB'23, PMB'21, Medical Physics'21, AAPM'21]

    nadeemlab/Physics-ArX’s past year of commit activity
    Python 73 18 0 0 Updated May 10, 2023
  • CIR Public

    Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]

    nadeemlab/CIR’s past year of commit activity
    Python 40 7 0 0 Updated Feb 9, 2023
  • coincidencetest Public

    Exact test for significant feature combination

    nadeemlab/coincidencetest’s past year of commit activity
    Python 6 0 0 0 Updated Jun 22, 2022

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