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1. CellSort CellSort Public

   This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and valid…

   MATLAB 26 17

2. SingleCellFusion SingleCellFusion Public

   Forked from FangmingXie/SingleCellFusion_dev

   SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data

   Jupyter Notebook 12

3. snmcseq snmcseq Public

   Tools for computational analysis of single nuclei methylC-Seq data, as described in Luo, Keown et al. (2017)

   Python 7 3

4. robustlink robustlink Public

   Forked from FangmingXie/robustlink

   A python package that links enhancers to genes using single-cell transcriptomes and epigenomes

   Python 4

5. mop mop Public

   Multiomics Processing

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6. EpiAttend EpiAttend Public

   Single cell epigenome modeling

   Python 3 1