Bulk_RNA_seq

Generic pipeline for Bulk RNA seq analysis from a fastq folder

Name		Name	Last commit message	Last commit date
Latest commit History 26 Commits
1_start_pipeline.sh		1_start_pipeline.sh
2_run_pipeline.sh		2_run_pipeline.sh
3_rename_fastqs.sh		3_rename_fastqs.sh
4_run_fastqc.sh		4_run_fastqc.sh
5_star_loop.sh		5_star_loop.sh
6_run_featureCounts_batched.sh		6_run_featureCounts_batched.sh
Medgenome_run_star.sh		Medgenome_run_star.sh
OMRF_run_star.sh		OMRF_run_star.sh
README.md		README.md
RNA_seq_pipeline.sh		RNA_seq_pipeline.sh
fastqtofq.sh		fastqtofq.sh
run_featureCounts.sh		run_featureCounts.sh
run_featureCounts_looped.sh		run_featureCounts_looped.sh
stitch_fastqs.sh		stitch_fastqs.sh

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