Imagen MRI data processing

freesurfer

Segmentation of structural MRI data with FreeSurfer.

tbss_dti

DTI data preprocessed for tract-based spatial statistics (current version).

tbss_noddi

NODDI data preprocessed for tract-based spatial statistics (current version).

fsl_dti

Diffusion data preprocessed with fsl (deprecated version).

onsets_contrasts

From CSV behavioral files to onsets.

rsfMRI_preprocessing

Preprocessing of resting-state fMRI data with FSL and ANTS.

Obsolete FU2 processing code

spm_new_segment_FU2

Segmentation of baseline and FU2 structural MRI data with SPM.

spm_preprocessing_FU2

Preprocessing of baseline and FU2 task-based fMRI data with SPM.

spm_first_level_FU2

1st level processing of baseline and FU2 task-based fMRI data with SPM.