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8 changes: 4 additions & 4 deletions mesh.py
Original file line number Diff line number Diff line change
Expand Up @@ -229,13 +229,13 @@ def elastic_mesh_3d(
pad_pos = list(pad_neg)
for dim in direction[::-1]: # zyx
if dim == -1:
sel1.append(np.s_[:-1])
sel2.append(np.s_[1:])
sel1.append(np.s_[:-1]) # pyrefly: ignore[bad-argument-type]
sel2.append(np.s_[1:]) # pyrefly: ignore[bad-argument-type]
pad_pos.append((0, 1))
pad_neg.append((1, 0))
elif dim == 1:
sel1.append(np.s_[1:])
sel2.append(np.s_[:-1])
sel1.append(np.s_[1:]) # pyrefly: ignore[bad-argument-type]
sel2.append(np.s_[:-1]) # pyrefly: ignore[bad-argument-type]
pad_pos.append((1, 0))
pad_neg.append((0, 1))
elif dim == 0:
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8 changes: 4 additions & 4 deletions stitch_elastic.py
Original file line number Diff line number Diff line change
Expand Up @@ -254,11 +254,11 @@ def compute_flow_map(
post_sel[1 - axis] = np.s_[:overlap]

if ortho_offset > 0: # post is shifted down relative to pre
pre_sel[axis] = np.s_[ortho_offset:]
post_sel[axis] = np.s_[:-ortho_offset]
pre_sel[axis] = np.s_[ortho_offset:] # pyrefly: ignore[unsupported-operation]
post_sel[axis] = np.s_[:-ortho_offset] # pyrefly: ignore[unsupported-operation]
elif ortho_offset < 0: # post is shifted up relative to pre
pre_sel[axis] = np.s_[:ortho_offset]
post_sel[axis] = np.s_[-ortho_offset:]
pre_sel[axis] = np.s_[:ortho_offset] # pyrefly: ignore[unsupported-operation]
post_sel[axis] = np.s_[-ortho_offset:] # pyrefly: ignore[unsupported-operation]

pre = pre[tuple(pre_sel)]
post = post[tuple(post_sel)]
Expand Down
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