All pull requests

Pull requests

• Add fold-mean Optuna search with a per-fold time budget

  #145·cornelislouisa opened Oct 27, 2026Collaborator·

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  1

• Group tuberculosis k-fold splits by country of serum collection

  #144·cornelislouisa opened Oct 27, 2026Collaborator·

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  1

• Run sklearn baselines on the GNN features and folds with one global configuration

  #143·cornelislouisa opened Oct 27, 2026Collaborator·

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• Make leak-free 5-fold cross-validation the default for omics datasets

  #142·cornelislouisa opened Oct 27, 2026Collaborator·

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  3

• Share one STRING threshold and make shared caches safe under concurrency

  #141·cornelislouisa opened Oct 27, 2026Collaborator·

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  1

• Update website graph statistics with fold-0 stats for all six datasets

  #140·johmathe opened Sep 25, 2026Collaborator·

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• Update typer requirement from >=0.9.0 to >=0.24.1

  dependenciespython
  #118·dependabot[bot] opened Apr 13, 2026Bot·

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• Update huggingface-hub requirement from >=0.20.0 to >=1.10.1

  dependenciespython
  #117·dependabot[bot] opened Apr 13, 2026Bot·

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• Update datasets requirement from >=2.14.0 to >=4.8.4

  dependenciespython
  #116·dependabot[bot] opened Apr 13, 2026Bot·

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• Update lightning requirement from >=2.5.0 to >=2.6.1

  dependenciespython
  #115·dependabot[bot] opened Apr 13, 2026Bot·

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• Bump torch from 2.8.0 to 2.11.0

  dependenciespython
  #101·dependabot[bot] opened Mar 24, 2026Bot·

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• Add grid search for thresholds

  #83·johmathe opened Jan 7, 2026Collaborator·

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