Wiebke#3

Open

WiebkeSchmitt wants to merge 33 commits intomasterfrom

Commits on Mar 5, 2018

added first draft for picard CollectMultipleMetrics

authored and
committed

Commits on Mar 8, 2018

Commits on Mar 12, 2018

Commits on Mar 13, 2018

Commits on Mar 14, 2018

corrected GAL workflow and adjusted job file accordingly
WiebkeSchmitt
committed

Commits on Mar 15, 2018

bwa-aln step and bwa-sampe step are now working, error in samtools-view step
WiebkeSchmitt
committed
- corrected prefix and reference genome in job file - corrected workflow further: outputname for bwa-aln step is now corrected
WiebkeSchmitt
committed
name for bwa-aln works now
WiebkeSchmitt
committed

Commits on Mar 16, 2018

Commits on Mar 19, 2018

started dividing GAL workflow into two parts for parallelization
WiebkeSchmitt
committed

Commits on Mar 20, 2018

Commits on Mar 22, 2018

Commits on Mar 26, 2018

Commits on Mar 27, 2018

bwa-index is now running without error, but still without output
WiebkeSchmitt
committed

Commits on Mar 28, 2018

bwa index tool is debugged further, but still not running as desired
WiebkeSchmitt
committed