Skip to content

Remediate CDC_Mortality_UnderlyingCause_SingleRace import #2146

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
shvngisingh wants to merge 2 commits into
base: master
Choose a base branch
from
Open

Remediate CDC_Mortality_UnderlyingCause_SingleRace import #2146

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
aee0e30
Remediate CDC Mortality Underlying Cause Single Race import pipeline
shvngisingh Aug 7, 2026
173c1d4
Update README.md
shvngisingh Aug 7, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions statvar_imports/us_cdc/single_race/README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@ To obtain the raw input files, data must be manually downloaded from the source.
*Single Race (6 categories)
*ICD-10-113 Cause List

For each download, a specific state must be selected. The desired year range is from 2018 to 2023. After making the selections, click the "Send" button at the bottom to initiate the download.
For each download, a specific state must be selected. After making the selections, click the "Send" button at the bottom to initiate the download.


### Data Processing
Expand All @@ -38,7 +38,7 @@ After the files are downloaded, the data is processed using the stat_var_process

```bash

python3 ../../../tools/statvar_importer/stat_var_processor.py --existing_statvar_mcf=gs://unresolved_mcf/scripts/statvar/stat_vars.mcf --input_data=input_files/*.csv --pv_map=single_race_pvmap.csv --config_file=single_race_metadata.csv --output_path=output/underlyingcauseofdeath2018_2023singlerace
python3 ../../../tools/statvar_importer/stat_var_processor.py --existing_statvar_mcf=gs://unresolved_mcf/scripts/statvar/stat_vars.mcf --input_data=input_files/*.csv --pv_map=single_race_pvmap.csv --config_file=single_race_metadata.csv --output_path=output/underlyingcauseofdeath_singlerace --output_counters=counters/underlyingcauseofdeath_singlerace.csv
```

### Automation
Expand Down
11 changes: 7 additions & 4 deletions statvar_imports/us_cdc/single_race/manifest.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,16 +9,19 @@
"provenance_description": "Mortality statistics, categorized by demographic factors and specific causes of death, location, race at state level.",
"scripts": [
"download.sh",
"../../../tools/statvar_importer/stat_var_processor.py --existing_statvar_mcf=gs://unresolved_mcf/scripts/statvar/stat_vars.mcf --input_data=input_files/*.csv --pv_map=single_race_pvmap.csv --config_file=single_race_metadata.csv --output_path=output/underlyingcauseofdeath2018_2023singlerace"
"../../../tools/statvar_importer/stat_var_processor.py --existing_statvar_mcf=gs://unresolved_mcf/scripts/statvar/stat_vars.mcf --input_data=input_files/*.csv --pv_map=single_race_pvmap.csv --config_file=single_race_metadata.csv --output_path=output/underlyingcauseofdeath_singlerace --output_counters=counters/underlyingcauseofdeath_singlerace.csv"
],
"import_inputs": [
{
"template_mcf": "output/underlyingcauseofdeath2018_2023singlerace.tmcf",
"cleaned_csv": "output/underlyingcauseofdeath2018_2023singlerace.csv"
"template_mcf": "output/underlyingcauseofdeath_singlerace.tmcf",
"node_mcf": "output/underlyingcauseofdeath_singlerace_stat_vars.mcf",
"cleaned_csv": "output/underlyingcauseofdeath_singlerace.csv"
}
],
"validation_config_file": "validation_config.json",
"source_files": [
"input_files/*.csv"
"input_files/*.csv",
"counters/*.csv"
],
"cron_schedule": "30 08 8-14 * 6"
}
Expand Down
6 changes: 4 additions & 2 deletions statvar_imports/us_cdc/single_race/single_race_metadata.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,8 @@ url,https://wonder.cdc.gov/controller/datarequest/D158
description,"Mortality statistics, categorized by demographic factors and specific causes of death, location, race at state level"
#place_type,state level
#places_within,
start_date,2018
end_date,2023
#start_date,2018
#end_date,2024
release_frequency,P1Y
process,
comments,
Expand All @@ -13,3 +13,5 @@ mapped_rows,1
mapped_columns,11
header_rows,1
debug,0
output_only_new_statvars,False