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@cbib

Centre de Bioinformatique de Bordeaux

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  1. Seurat-Integrate Seurat-Integrate Public

    R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an integration benchmarking toolkit.

    R 33 3

  2. TrialMatchAI TrialMatchAI Public

    TrialMatchAI aims to leverage large language models (LLMs) to streamline patient matching with clinical trials based on unique patient characteristics and eligibility criteria

    Python 18 4

  3. DeepSpot DeepSpot Public

    DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images

    Python 15 3

  4. MIX MIX Public

    MIX: Combining multiple assemblies from NGS data

    Python 13 6

  5. virhunter virhunter Public

    Deep Learning method for novel virus detection in sequencing data

    Python 10 2

  6. MICADo MICADo Public

    Looking for mutations in PacBio cancer data: an alignment-free method

    Python 8 2

Repositories

Showing 10 of 18 repositories
  • linda Public

    Web application for managing experimental and environmental metadata for plant experiments

    cbib/linda’s past year of commit activity
    TypeScript 2 MIT 0 13 19 Updated Feb 11, 2026
  • TrialMatchAI Public

    TrialMatchAI aims to leverage large language models (LLMs) to streamline patient matching with clinical trials based on unique patient characteristics and eligibility criteria

    cbib/TrialMatchAI’s past year of commit activity
    Python 18 4 0 0 Updated Feb 10, 2026
  • DIMet Public

    Differential analysis of targeted Isotope-labeled Metabolomics data

    cbib/DIMet’s past year of commit activity
    Python 5 MIT 2 0 0 Updated Jan 15, 2026
  • Seurat-Integrate Public

    R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an integration benchmarking toolkit.

    cbib/Seurat-Integrate’s past year of commit activity
    R 33 3 4 0 Updated Sep 3, 2025
  • COBRA Public

    Multi-omics data integrative web application for plant-virus resistance gene

    cbib/COBRA’s past year of commit activity
    HTML 2 3 0 0 Updated Sep 2, 2025
  • virhunter Public

    Deep Learning method for novel virus detection in sequencing data

    cbib/virhunter’s past year of commit activity
    Python 10 2 1 0 Updated Mar 19, 2025
  • DeconvoliSTa Public
    cbib/DeconvoliSTa’s past year of commit activity
    R 0 0 0 0 Updated Oct 29, 2024
  • ProteomX Public

    Statistical and Functional analysis and interpretation of proteomics data

    cbib/ProteomX’s past year of commit activity
    Python 0 MIT 1 30 6 Updated Sep 4, 2024
  • TraceGroomer Public

    Format and normalise tracer metabolomics given file(s), to produce the .csv files which are ready for DIMet analysis.

    cbib/TraceGroomer’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Aug 6, 2024
  • TempAI Public
    cbib/TempAI’s past year of commit activity
    Python 1 0 0 0 Updated Jul 18, 2024

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