Pytest integrated by tomc271 · Pull Request #3331 · boutproject/BOUT-dev

tomc271 · 2026-03-17T10:43:55Z

No description provided.

…ted_or_mms_test

matching either to a file named `test_foo.py`.

Native configuration is x86_64-pc-linux-gnu === tests === Schedule of variations: unix Running target unix Using /usr/share/dejagnu/baseboards/unix.exp as board description file for target. Using /usr/share/dejagnu/config/unix.exp as generic interface file for target. === Summary === to in CMakeLists.txt

…ctest

…renaming

…ipts

so that the `input` directory is found.

so that the `test` directory is found.

so that the `data` directory is found.

Fails due to missing file `grid.fci.nc`.

Change directory to exe location prior to attempting to run it.

to get (Fedora) ci to work in docker container.

`pytest` dependency-group.

Install `pytest` and `dev` dependency groups.

rather than apt.

via pip, into the same venv.

They are installed by pip and listed in requirements.txt.

using CMAKE_CTEST_ARGUMENTS.

ZedThree · 2026-04-28T14:39:44Z

@dschwoerer This PR now puts a hard requirement of pytest (and pytest-xdist) for running the tests. The dependencies are in pyproject.toml -- where's the best place to install these for the Fedora CI?

(set -e).

dschwoerer · 2026-04-29T04:11:08Z

The best place is to put it here: boutproject/bout-container-base#50

Is there a plan to add a test to ensure the examples can at least be compiled?

dschwoerer · 2026-04-29T04:49:10Z

The builds are not failing, even though they should:

.....F..................F..............................
=================================== FAILURES ===================================

Also, do you know why for fedora everything but one test is skipped?

ZedThree · 2026-04-29T08:48:36Z

@tomc271 is already on it :)

Fedora skips all but one because it's currently missing the pytest-xdist dependency. That one test is separate for some reason (I think the timeout, @tomc271 ?) and doesn't need that dependency

dschwoerer · 2026-04-29T09:23:43Z

It should be there, as soon as the new container image has been build

(remove spurious collect() wrapper).

ZedThree reviewed Mar 18, 2026

View reviewed changes

tomchapman added 29 commits April 14, 2026 12:12

Use pytest rather than runtest as the command set in bout_add_integra…

a102ffe

…ted_or_mms_test

Rename runtest file to test-foo.py for each integrated test

a55dda0

Rename runtest file to test-foo.py for each MMS test

053f62a

Convert runtest file to use pytest for test_drift_instability

db34143

Handle test files for tests named either test-foo or foo

0ed0750

matching either to a file named `test_foo.py`.

Handle test files with hyphens or prefixed with

fdd93e0

Update symlink to renamed runtest file

f0b4405

Rename more runtest files

4dd41cc

Rename more runtest files

f9e2374

Use PATH-based pytest executable

d00629c

Fix more renamings

393ac3e

Change custom_target check-integrated-tests to use pytest instead of …

4deaf22

…ctest

Some runtest files are shell scripts not python scripts, so revert …

82ff7ca

…renaming

Add python tests to run those runtest files that are not python scr…

681c2fb

…ipts

Convert test_cyclic.py to a valid pytest file

01cc49c

Convert several more test files to work with pytest

09114fe

Change directory before calling boutpp.init()

be04639

so that the `input` directory is found.

Change directory before calling boutpp.init()

abe75f2

so that the `test` directory is found.

Change directory before calling boutpp.Field3D.fromCollect()

52436a8

so that the `data` directory is found.

Modify more test files for running via pytest

f7378bc

MPI oversubscribe for communications test

5a959a2

Change directory before removing files in data directory

e977ed6

Modify test_communications to run via pytest

9afb0b2

Modify test_delp2 to run via pytest

18b9c90

Modify test_fci_boundary to run via pytest

c55ab8f

Fails due to missing file `grid.fci.nc`.

Modify test_fieldgroupcomm to run via pytest

125dd80

Change directory to exe location prior to attempting to run it.

Modify test_gyro to run via pytest

ede926e

Change directory to exe location prior to attempting to run it.

Modify test_interpolate to run via pytest

cc47c24

Change directory to exe location prior to attempting to run it.

tomchapman added 4 commits April 14, 2026 12:14

Add pytest-xdist to requirements.txt

bf5e02b

Fix pytest command not found in CI by using python3 -m pytest

b28b5a5

Use the Python executable that CMake discovered during configuration

8852248

Add OpenMPI oversubscription overrides

82bbe9f

to get (Fedora) ci to work in docker container.

tomc271 force-pushed the pytest-integrated branch from 7373881 to 8852248 Compare April 15, 2026 09:27

tomchapman added 15 commits April 15, 2026 10:40

Install pytest in fedora ci script

f72de98

Add pytest and pytest-xdist to pyproject.toml

a60fdc0

`pytest` dependency-group.

Use uv sync instead of pip install, in github tests workflow

c2ef619

Install `pytest` and `dev` dependency groups.

Add no-install-project option to uv command

5af0f19

Add no-dev option to uv command in github workflow

b5509a9

Install python, pip, pytest, numpy, and scipy through uv

7b33082

rather than apt.

Set VIRTUAL_ENV to force CMake to recognize the virtual environment

7c4b0a9

Pass DPython3_EXECUTABLE to cmake script, to force it to use the venv

b34d4fb

Install the core requirements

8389802

via pip, into the same venv.

Remove numpy and scipy from pytest dependency-group in pyproject.toml

967bb07

They are installed by pip and listed in requirements.txt.

Merge branch 'uv-for-pytest' into pytest-integrated

9b87d16

Reinstate timeout for tests

e05bd51

using CMAKE_CTEST_ARGUMENTS.

Simplify Path.exists() expressions

30b5223

Remove previously deleted test

becb76c

Prefer numpy.testing.assert_allclose

a1c67ff

ZedThree reviewed Apr 28, 2026

View reviewed changes

Comment thread tests/run_integrated_tests.sh

Add fail-fast option to run_integrated_tests.sh

9ff2e14

(set -e).

tomchapman added 3 commits April 29, 2026 13:09

Add autouse fixture to call boutpp.finalise()

235c524

Fix test_fci_boundary

0917c92

(remove spurious collect() wrapper).

Run pytest verbosely when CI flag is true

87931a7

Provide feedback

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Pytest integrated#3331

Pytest integrated#3331
tomc271 wants to merge 170 commits intonextfrom
pytest-integrated

tomc271 commented Mar 17, 2026

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ZedThree commented Apr 28, 2026

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dschwoerer commented Apr 29, 2026

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dschwoerer commented Apr 29, 2026

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ZedThree commented Apr 29, 2026

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dschwoerer commented Apr 29, 2026

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tomc271 commented Mar 17, 2026

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ZedThree commented Apr 28, 2026

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dschwoerer commented Apr 29, 2026

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dschwoerer commented Apr 29, 2026

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ZedThree commented Apr 29, 2026

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dschwoerer commented Apr 29, 2026

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