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@blab

Bedford Lab

Viruses, evolution and immunity at Fred Hutch.

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  1. nextflu nextflu Public

    Real-time tracking of influenza evolution

    JavaScript 88 18

  2. blotter blotter Public

    bedford lab research

    HTML 68 94

  3. global-migration global-migration Public

    Analysis of global migration patterns of seasonal influenza viruses

    Mathematica 22

  4. baltic baltic Public

    Forked from evogytis/baltic

    baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is g…

    Jupyter Notebook 12 6

  5. siv-cst siv-cst Public

    Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

    Jupyter Notebook 6 2

  6. zika-seq zika-seq Public

    Pipelines to do MinION sequencing of Zika virus

    Python 15 3

Repositories

Showing 10 of 114 repositories
  • ncov-usa-mig Public

    Analysis of SARS-CoV-2 Surveillance Sequences Across the United States

    blab/ncov-usa-mig’s past year of commit activity
    HTML 1 0 0 0 Updated Jan 22, 2026
  • bacterial-args Public

    Recombination-aware bacterial phylgoeography using ARGs

    blab/bacterial-args’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 21, 2026
  • trajectories Public

    Evolutionary trajectories

    blab/trajectories’s past year of commit activity
    Python 1 0 0 1 Updated Jan 20, 2026
  • phylogeo-signal Public

    Code and data for: "Characterizing the informativeness of pathogen genome sequence datasets about transmission between population groups"

    blab/phylogeo-signal’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 16, 2026
  • mutational-embedding-vectors Public
    blab/mutational-embedding-vectors’s past year of commit activity
    Python 0 0 0 0 Updated Jan 14, 2026
  • blotter Public

    bedford lab research

    blab/blotter’s past year of commit activity
    HTML 68 94 2 0 Updated Jan 13, 2026
  • esm-selection Public
    blab/esm-selection’s past year of commit activity
    Python 0 0 0 0 Updated Jan 8, 2026
  • cytb Public

    Nextstrain build for mammalian cytochrome b

    blab/cytb’s past year of commit activity
    Python 0 0 0 0 Updated Jan 8, 2026
  • sequence-vaes Public

    Variational Autoencoders for biological sequences

    blab/sequence-vaes’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 16, 2025
  • embedded-pathways Public

    Using ESM to chart evolution through embedding space

    blab/embedded-pathways’s past year of commit activity
    Mathematica 0 1 0 0 Updated Dec 10, 2025
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