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@bioFAM

bioFAM

Our groups develop and apply computational approaches to study molecular variations and their phenotypic consequence.

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  1. MOFA2 MOFA2 Public

    Multi-Omics Factor Analysis

    R 423 64

  2. MOFA MOFA Public

    Multi-Omics Factor Analysis

    R 269 68

  3. mofapy2 mofapy2 Public

    Multi-omics factor analysis v2

    Python 69 30

  4. mofaflex mofaflex Public

    factor models for omics data

    Python 47 3

  5. mofax mofax Public

    Work with trained factor models in Python

    Jupyter Notebook 41 17

  6. scDORI scDORI Public

    scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (eGRNs) from single-cell multiome data (RNA + ATAC).

    Python 35 7

Repositories

Showing 10 of 17 repositories
  • MOFA2 Public

    Multi-Omics Factor Analysis

    bioFAM/MOFA2's past year of commit activity
    R 423 LGPL-3.0 64 65 1 Updated Sep 10, 2026
  • mofaflex-analysis Public

    Analyses, benchmarks and tutorials related to the Prismo project

    bioFAM/mofaflex-analysis's past year of commit activity
    Jupyter Notebook 6 0 1 0 Updated Sep 8, 2026
  • mofaflex Public

    factor models for omics data

    bioFAM/mofaflex's past year of commit activity
    Python 47 BSD-3-Clause 3 2 2 Updated Sep 7, 2026
  • mofapy2 Public

    Multi-omics factor analysis v2

    bioFAM/mofapy2's past year of commit activity
    Python 69 LGPL-3.0 30 6 0 Updated Sep 4, 2026
  • scDORI Public

    scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (eGRNs) from single-cell multiome data (RNA + ATAC).

    bioFAM/scDORI's past year of commit activity
    Python 35 MIT 7 5 4 Updated Aug 15, 2026
  • mofaflex-counselor Public

    Jupyter AI persona to help users configure MOFA-FLEX

    bioFAM/mofaflex-counselor's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jul 15, 2026
  • MOFA2_tutorials Public

    MOFA2 Tutorials

    bioFAM/MOFA2_tutorials's past year of commit activity
    HTML 7 8 1 1 Updated Dec 19, 2025
  • mofax Public

    Work with trained factor models in Python

    bioFAM/mofax's past year of commit activity
    Jupyter Notebook 41 MIT 17 4 6 Updated Oct 22, 2024
  • cellij Public

    Implementation of a Modular Multi-Omics Factor Model Framework

    bioFAM/cellij's past year of commit activity
    Python 5 BSD-3-Clause 0 13 3 Updated Oct 19, 2023
  • bioFAM/cellij-notebooks's past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 0 0 Updated Sep 15, 2023

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