build(deps): bump the uv-dependencies group with 7 updates by dependabot[bot] · Pull Request #3094 · apache/sedona

dependabot · 2026-07-01T00:21:15Z

Bumps the uv-dependencies group with 7 updates:

Package	From	To
mike	`2.1.4`	`2.2.0`
sphinx-rtd-theme	`3.0.2`	`3.1.0`
prek	`0.4.0`	`0.4.5`
geopandas	`1.1.2`	`1.1.3`
jupyterlab	`4.5.9`	`4.6.0`
numpy	`1.26.4`	`2.2.6`
pydeck	`0.9.1`	`0.9.2`

Updates mike from 2.1.4 to 2.2.0

Release notes

Sourced from mike's releases.

v2.2.0

New features

Add support for ProperDocs

Bug fixes

Use DST timestamps for new commits when DST is in effect

Support ISO8601 and RFC 2822 values for GIT_COMMITTER_DATE

Changelog

Sourced from mike's changelog.

v2.2.0 (2026-04-13)

New features

Add support for ProperDocs

Bug fixes

Use DST timestamps for new commits when DST is in effect

Support ISO8601 and RFC 2822 values for GIT_COMMITTER_DATE

Commits

b01e030 Update version to 2.2.0
ca60b84 Fix deprecation warning about split
5b5ed31 Add ProperDocs support; resolves #259
2adb1f1 Improve make_when implementation; resolves #260
7363ce5 Update version to 2.2.0.dev0
See full diff in compare view

Updates sphinx-rtd-theme from 3.0.2 to 3.1.0

Changelog

Sourced from sphinx-rtd-theme's changelog.

3.1.0

Added support for docutils 0.22

Added support for Sphinx 9.x

.. _release-3.1.0rc2:

3.1.0rc2

Added support for docutils 0.22

.. _release-3.1.0rc1:

3.1.0rc1

Added support for Sphinx 9.x

.. _release-3.0.2:

Commits

795de79 Release 3.1.0 (#1676)
66d0fdd Add Python 3.14 to the test suite (#1668)
fbe5e60 3.1.0rc2 with support for docutils 0.22 (#1674)
a76174c Add support for docutils 0.22 (#1671)
20733c3 Add support for Sphinx 9.0.0 (#1666)
71aacd3 Update Code of Conduct URL (#1664)
5a26375 Run tests and build docs with Sphinx 8.2 (#1640)
8d4d394 Sidebar should not be floating on mobile (#1622)
See full diff in compare view

Updates prek from 0.4.0 to 0.4.5

Release notes

Sourced from prek's releases.

0.4.5

Release Notes

Released on 2026-06-15.

✨Highlights

0.4.5 completes prek's pre-commit language coverage. With R, Conda, Perl, and coursier now supported, prek supports every language available in pre-commit, plus prek-only modern languages such as Bun and Deno.

This is full feature parity with pre-commit. The last major compatibility gap is closed, and prek is now on the path to 1.0.

💚 Sponsorship

If prek saves time for you or your team, please consider sponsoring the project on GitHub Sponsors. It helps keep new features, performance work, and maintenance moving.

Enhancements

Add Perl language support (#2201)

Add R language support (#2206)

Add Conda language support (#2203)

Add coursier language support (#2194)

Add group filters to list (#2152)

Remove legacy repo path support (#2150)

Skip cloning fully filtered remote repos (#2151)

Performance

Avoid building JSON trees in syntax hooks (#2156)

Scan mixed line endings without line vector (#2160)

Skip file scan for always-run no-filename hooks (#2155)

Use fixed buffer for EOF scan (#2163)

Use fixed buffer for private key scan (#2164)

Bug fixes

Fix pretty-format-json CRLF handling (#2210)

Handle missing blobs in diff snapshots (#2211)

Ignore coursier channel from working repo (#2202)

Contributors

@j178

Install prek 0.4.5

... (truncated)

Changelog

Sourced from prek's changelog.

0.4.5

Released on 2026-06-15.

✨Highlights

0.4.5 completes prek's pre-commit language coverage. With R, Conda, Perl, and coursier now supported, prek supports every language available in pre-commit, plus prek-only modern languages such as Bun and Deno.

This is full feature parity with pre-commit. The last major compatibility gap is closed, and prek is now on the path to 1.0.

💚 Sponsorship

If prek saves time for you or your team, please consider sponsoring the project on GitHub Sponsors. It helps keep new features, performance work, and maintenance moving.

Enhancements

Add Perl language support (#2201)

Add R language support (#2206)

Add Conda language support (#2203)

Add coursier language support (#2194)

Add group filters to list (#2152)

Remove legacy repo path support (#2150)

Skip cloning fully filtered remote repos (#2151)

Performance

Avoid building JSON trees in syntax hooks (#2156)

Scan mixed line endings without line vector (#2160)

Skip file scan for always-run no-filename hooks (#2155)

Use fixed buffer for EOF scan (#2163)

Use fixed buffer for private key scan (#2164)

Bug fixes

Fix pretty-format-json CRLF handling (#2210)

Handle missing blobs in diff snapshots (#2211)

Ignore coursier channel from working repo (#2202)

Contributors

@j178

0.4.4

Released on 2026-06-04.

... (truncated)

Commits

bb31082 Update README.md
fa4e2dc Bump version to 0.4.5 (#2221)
e9336fa Add R language support (#2206)
97a5a15 Update Rust crate which to v8.0.3 (#2219)
20a519a Update Rust crate ignore to v0.4.26 (#2218)
88f0e2b Update dependency uv to v0.11.19 (#2214)
7bd4300 Update GitHub Actions to v7 (#2220)
48ed5cc Update Rust crate async_zip to 0.0.18 (#2217)
257e98a Update pre-commit to v1.47.2 (#2216)
0c04602 Update GitHub Actions (#2215)
Additional commits viewable in compare view

Updates geopandas from 1.1.2 to 1.1.3

Release notes

Sourced from geopandas's releases.

Version 1.1.3

What's Changed

This release addresses a handful of small compatibility issues with pandas 3.0 and backports some bugfixes.

Bug fixes:

Improved compatibility with pandas 3.0 Copy-on-Write feature, making use of deferred copies where possible (#3298, #3711).

Fix GeoSeries.sample_points not accepting list-like size when generating points using pointpaterns (#3710).

Fix from_wkt/wkb to correctly handle missing values with pandas 3 (where the new str dtype is used) (#3714).

Fix to_postgis to correctly handle missing values with pandas 3 (where the new str dtype is used) (#3722).

Using loc to assign column values to a new row index now correctly preserves the column CRS and geometry dtype on pandas 3.1, due to an upstream bug fix (#3741, Pandas #62523)

Random states in pointpats methods of sample_points can now be fixed with rng (#3737).

Full Changelog: geopandas/geopandas@v1.1.2...v1.1.3

Changelog

Sourced from geopandas's changelog.

Version 1.1.3 (March 10, 2026)

This release addresses a handful of small compatibility issues with pandas 3.0 and backports some bugfixes.

Bug fixes:

Improved compatibility with pandas 3.0 Copy-on-Write feature, making use of deferred copies where possible (#3298, #3711).

Fix GeoSeries.sample_points not accepting list-like size when generating points using pointpaterns (#3710).

Fix from_wkt/wkb to correctly handle missing values with pandas 3 (where the new str dtype is used) (#3714).

Fix to_postgis to correctly handle missing values with pandas 3 (where the new str dtype is used) (#3722).

Using loc to assign column values to a new row index now correctly preserves the column CRS and geometry dtype on pandas 3.1, due to an upstream bug fix (#3741, Pandas #62523)

Random states in pointpats methods of sample_points`` can now be fixed with rng` (#3737).

Commits

f5fe3ff RLS: v1.1.3
c104670 pointpats <2.5.3 test compat
af36b14 ENH: add pointpats as an optional dependency & pass in rng (#3737)
d9ed84a COMPAT: fix failing test for loc concatenation crs preservation with pandas 3...
1b1ddc2 MAINT: use trusted publishing for releasing to PyPI (#3734)
8d0c05d changelog
a424f17 Avoid returning deep copies with pandas 3.0 (with Copy-on-Write) (#3298)
03fa43e MAINT: cleanup release warning for project.license table (#3603)
29fdb30 CI: remove usage of PANDAS_FUTURE_INFER_STRINGS=0 (#3715)
9070e13 missing changelog entries
Additional commits viewable in compare view

Updates jupyterlab from 4.5.9 to 4.6.0

Release notes

Sourced from jupyterlab's releases.

v4.6.0

4.6.0

Full Release Notes

Full Changelog

New features added

Support horizontal activity bars #18832 (@jtpio, @krassowski)

Expose cell index and cell count in the statusbar #18708 (@krassowski, @jtpio)

Allow moving sections between panels #18703 (@Darshan808, @Carreau, @brichet, @jtpio, @krassowski)

Make the breadcrumbs in filebrowser editable + completion #18571 (@Carreau, @krassowski)

Add "Date Created" column to file browser #18533 (@ktaletsk, @RRosio, @cursoragent, @krassowski)

Add command and buttons to select previous/next last modified cell #18210 (@Yahiewi, @brichet, @krassowski)

feat(completer): Add syntax highlighting for ghost text #18073 (@MUFFANUJ, @Darshan808, @jtpio, @krassowski)

Deprecated features

Replace deprecated keyCode with key #18674 (@IsabelParedes, @krassowski)

Drives: Deprecate the notion of defaultContentProvider #18169 (@martinRenou, @brichet, @jasongrout, @jtpio, @krassowski)

Enhancements made

Update lumino to v2026.5.25 #18942 (@krassowski, @jtpio)

Improve scroll overlay icon placement #18907 (@krassowski, @jtpio)

Optimize resizing dock panels (with an opt-out) #18877 (@krassowski, @Darshan808)

Use resolvePath API for traceback path resolution #18876 (@MUFFANUJ, @krassowski)

Add loading animation for file browser refresh action #18855 (@Siddhazntx, @krassowski)

Upgrade Stylelint to v16 #18848 (@MUFFANUJ, @krassowski)

Add category-level ordering support for launcher sections via categoryRank #18779 (@tsharma-dev, @MUFFANUJ, @krassowski)

File browser: replace Preferred icon to avoid confusion with Home #18773 (@tsharma-dev, @Carreau, @IsabelParedes, @krassowski)

Ask if the user wants to sanitize HTML export and send param to jupyter server #18765 (@Yann-P, @krassowski)

Add a setting to disable the dock panel padding #18760 (@jtpio, @krassowski)

Remove Simple Mode switch from the status bar #18757 (@jtpio, @aarondr77, @krassowski)

Add toggle command for output scrolling #18754 (@itsmejay80, @krassowski)

Refactor shared document dirty state #18739 (@davidbrochart, @SylvainCorlay, @brichet, @jtpio, @krassowski)

Restrict 1-6 shortcuts for converting cell to headings to Markdown cells #18734 (@krassowski, @jtpio)

Add "toggle hidden file" to command palette #18732 (@Carreau, @krassowski)

Add command and Command Palette entry for crumbs path edition #18729 (@Carreau, @Copilot, @krassowski)

Integrate Plugin Playground into docs #18726 (@MUFFANUJ, @Carreau, @jtpio, @krassowski)

Allow reset query parameter with values (e.g. ?reset=1) #18702 (@tubaman, @claude, @itsmejay80, @krassowski)

Improve Keyboard Shortcuts in Settings Editor #18655 (@IsabelParedes, @krassowski)

Fix accessibility of Keyboard Shortcuts dialog #18650 (@IsabelParedes, @jayaprajapatii, @krassowski)

Update default font family to honor macOS system-wide ui-monospace #18647 (@flaviomartins, @krassowski)

Add deletable toggle to common tools notebook widget #18645 (@cmarmo, @krassowski)

Improve focus indicators #18619 (@IsabelParedes, @krassowski)

Expose IDefaultFileBrowserRenderer to customize the default file browser renderer #18600 (@jtpio, @krassowski)

Persist file browser sort state in state DB #18596 (@statxc, @krassowski)

Add language pack installation support via Settings > Language menu #18595 (@bittoby, @krassowski)

Improve screen reader behavior in launcher/notebook and add tests #18570 (@autodots-AHassan, @krassowski)

... (truncated)

Commits

604d873 [ci skip] Publish 4.6.0
abacfb9 Fix flaky 'Switch back and forth to reference page' test (#19043)
3554aaf [ci skip] Publish 4.6.0rc1
ec0b487 Bump markdown-it from 14.1.0 to 14.2.0 (#19041)
86e3ab5 Stabilize subpixel editor line shift on Welcome screenshot (#19039)
1bfdf4f Bump @babel/core from 7.21.0 to 7.29.6 (#19036)
153e500 Avoid debugger toolbar button flicker during kernel startup (#19006)
75804f0 Bump form-data from 4.0.5 to 4.0.6 (#19040)
f91166c Bump dompurify from 3.4.0 to 3.4.10 (#19037)
deb364d Split external link checks and only run if diff includes a URL (#19029)
Additional commits viewable in compare view

Updates numpy from 1.26.4 to 2.2.6

Release notes

Sourced from numpy's releases.

v2.2.6 (May 17, 2025)

NumPy 2.2.6 Release Notes

NumPy 2.2.6 is a patch release that fixes bugs found after the 2.2.5 release. It is a mix of typing fixes/improvements as well as the normal bug fixes and some CI maintenance.

This release supports Python versions 3.10-3.13.

Contributors

A total of 8 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

Charles Harris

Ilhan Polat

Joren Hammudoglu

Marco Gorelli +

Matti Picus

Nathan Goldbaum

Peter Hawkins

Sayed Adel

Pull requests merged

A total of 11 pull requests were merged for this release.

#28778: MAINT: Prepare 2.2.x for further development

#28851: BLD: Update vendor-meson to fix module_feature conflicts arguments...

#28852: BUG: fix heap buffer overflow in np.strings.find

#28853: TYP: fix NDArray[floating] + float return type

#28864: BUG: fix stringdtype singleton thread safety

#28865: MAINT: use OpenBLAS 0.3.29

#28889: MAINT: from_dlpack thread safety fixes

#28913: TYP: Fix non-existent CanIndex annotation in ndarray.setfield

#28915: MAINT: Avoid dereferencing/strict aliasing warnings

#28916: BUG: Fix missing check for PyErr_Occurred() in _pyarray_correlate.

#28966: TYP: reject complex scalar types in ndarray.__ifloordiv__

Checksums

MD5
259343f056061f6eadb2f4b8999d06d4  numpy-2.2.6-cp310-cp310-macosx_10_9_x86_64.whl
16fa85488e149489ce7ee044d7b0d307  numpy-2.2.6-cp310-cp310-macosx_11_0_arm64.whl
f01b7aea9d2b76b1eeb49766e615d689  numpy-2.2.6-cp310-cp310-macosx_14_0_arm64.whl
f2ddc2b22517f6e31caa1372b12c2499  numpy-2.2.6-cp310-cp310-macosx_14_0_x86_64.whl
52190e22869884f0870eb3df7a283ca9  numpy-2.2.6-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
8f382b9ca6770db600edd5ea2447a925  numpy-2.2.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
e604aae2ef6e01fb92ecc39aca0424d9  numpy-2.2.6-cp310-cp310-musllinux_1_2_aarch64.whl

... (truncated)

Commits

2b686f6 Merge pull request #28980 from charris/prepare-2.2.6
ed41828 REL: Prepare for the NumPy 2.2.6 release [wheel build]
83e4e7f Merge pull request #28966 from charris/backport-28958
248f0cb TYP: add rejection-tests for complex ndarray floordiv
5bad9da TYP: reject complex scalar types in ndarray.__ifloordiv__
6c42775 Merge pull request #28915 from charris/backport-28892
4277e7c Merge pull request #28916 from charris/backport-28898
bd1c863 BUG: Fix missing check for PyErr_Occurred() in _pyarray_correlate. (#28898)
87d1d8a MAINT: Avoid dereferencing/strict aliasing warnings during complex casts in `...
9e50659 Merge pull request #28913 from charris/backport-28908
Additional commits viewable in compare view

Updates pydeck from 0.9.1 to 0.9.2

Commits

See full diff in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

@dependabot rebase will rebase this PR
@dependabot recreate will recreate this PR, overwriting any edits that have been made to it
@dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
@dependabot ignore <dependency name> major version will close this group update PR and stop Dependabot creating any more for the specific dependency's major version (unless you unignore this specific dependency's major version or upgrade to it yourself)
@dependabot ignore <dependency name> minor version will close this group update PR and stop Dependabot creating any more for the specific dependency's minor version (unless you unignore this specific dependency's minor version or upgrade to it yourself)
@dependabot ignore <dependency name> will close this group update PR and stop Dependabot creating any more for the specific dependency (unless you unignore this specific dependency or upgrade to it yourself)
@dependabot unignore <dependency name> will remove all of the ignore conditions of the specified dependency
@dependabot unignore <dependency name> <ignore condition> will remove the ignore condition of the specified dependency and ignore conditions

Bumps the uv-dependencies group with 7 updates: | Package | From | To | | --- | --- | --- | | [mike](https://github.com/jimporter/mike) | `2.1.4` | `2.2.0` | | [sphinx-rtd-theme](https://github.com/readthedocs/sphinx_rtd_theme) | `3.0.2` | `3.1.0` | | [prek](https://github.com/j178/prek) | `0.4.0` | `0.4.5` | | [geopandas](https://github.com/geopandas/geopandas) | `1.1.2` | `1.1.3` | | [jupyterlab](https://github.com/jupyterlab/jupyterlab) | `4.5.9` | `4.6.0` | | [numpy](https://github.com/numpy/numpy) | `1.26.4` | `2.2.6` | | [pydeck](https://github.com/visgl/deck.gl) | `0.9.1` | `0.9.2` | Updates `mike` from 2.1.4 to 2.2.0 - [Release notes](https://github.com/jimporter/mike/releases) - [Changelog](https://github.com/jimporter/mike/blob/master/CHANGES.md) - [Commits](jimporter/mike@v2.1.4...v2.2.0) Updates `sphinx-rtd-theme` from 3.0.2 to 3.1.0 - [Changelog](https://github.com/readthedocs/sphinx_rtd_theme/blob/master/docs/changelog.rst) - [Commits](readthedocs/sphinx_rtd_theme@3.0.2...3.1.0) Updates `prek` from 0.4.0 to 0.4.5 - [Release notes](https://github.com/j178/prek/releases) - [Changelog](https://github.com/j178/prek/blob/master/CHANGELOG.md) - [Commits](j178/prek@v0.4.0...v0.4.5) Updates `geopandas` from 1.1.2 to 1.1.3 - [Release notes](https://github.com/geopandas/geopandas/releases) - [Changelog](https://github.com/geopandas/geopandas/blob/main/CHANGELOG.md) - [Commits](geopandas/geopandas@v1.1.2...v1.1.3) Updates `jupyterlab` from 4.5.9 to 4.6.0 - [Release notes](https://github.com/jupyterlab/jupyterlab/releases) - [Changelog](https://github.com/jupyterlab/jupyterlab/blob/main/RELEASE.md) - [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.5.9...@jupyterlab/lsp@4.6.0) Updates `numpy` from 1.26.4 to 2.2.6 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](numpy/numpy@v1.26.4...v2.2.6) Updates `pydeck` from 0.9.1 to 0.9.2 - [Release notes](https://github.com/visgl/deck.gl/releases) - [Changelog](https://github.com/visgl/deck.gl/blob/master/CHANGELOG.md) - [Commits](https://github.com/visgl/deck.gl/commits) --- updated-dependencies: - dependency-name: mike dependency-version: 2.2.0 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: uv-dependencies - dependency-name: sphinx-rtd-theme dependency-version: 3.1.0 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: uv-dependencies - dependency-name: prek dependency-version: 0.4.5 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: uv-dependencies - dependency-name: geopandas dependency-version: 1.1.3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: uv-dependencies - dependency-name: jupyterlab dependency-version: 4.6.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-dependencies - dependency-name: numpy dependency-version: 2.2.6 dependency-type: direct:production update-type: version-update:semver-major dependency-group: uv-dependencies - dependency-name: pydeck dependency-version: 0.9.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: uv-dependencies ... Signed-off-by: dependabot[bot] <support@github.com>

dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Jul 1, 2026

dependabot Bot requested a review from jiayuasu as a code owner July 1, 2026 00:21

dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Jul 1, 2026

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Uh oh!

build(deps): bump the uv-dependencies group with 7 updates#3094

build(deps): bump the uv-dependencies group with 7 updates#3094
dependabot[bot] wants to merge 1 commit into
masterfrom
dependabot/uv/uv-dependencies-75288606e6

dependabot Bot commented on behalf of github Jul 1, 2026

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

0 participants

Uh oh!

Conversation

dependabot Bot commented on behalf of github Jul 1, 2026

v2.2.0

New features

Bug fixes

v2.2.0 (2026-04-13)

New features

Bug fixes

3.1.0

3.1.0rc2

3.1.0rc1

0.4.5

Release Notes

✨Highlights

💚 Sponsorship

Enhancements

Performance

Bug fixes

Contributors

Install prek 0.4.5

0.4.5

✨Highlights

💚 Sponsorship

Enhancements

Performance

Bug fixes

Contributors

0.4.4

Version 1.1.3

What's Changed

Version 1.1.3 (March 10, 2026)

v4.6.0

4.6.0

New features added

Deprecated features

Enhancements made

v2.2.6 (May 17, 2025)

NumPy 2.2.6 Release Notes

Contributors

Pull requests merged

Checksums

MD5

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

0 participants