build(deps): bump the pip-dependencies group across 1 directory with 4 updates

[dependabot]

Bumps the pip-dependencies group with 4 updates in the /docker directory: geopandas, jupyterlab, pandas and rasterio.

Updates geopandas from 1.1.2 to 1.1.3

Release notes

Sourced from geopandas's releases.

Version 1.1.3

What's Changed

This release addresses a handful of small compatibility issues with pandas 3.0 and backports some bugfixes.

Bug fixes:

• Improved compatibility with pandas 3.0 Copy-on-Write feature, making use of deferred copies where possible (#3298, #3711).
• Fix GeoSeries.sample_points not accepting list-like size when generating points using pointpaterns (#3710).
• Fix from_wkt/wkb to correctly handle missing values with pandas 3 (where the new str dtype is used) (#3714).
• Fix to_postgis to correctly handle missing values with pandas 3 (where the new str dtype is used) (#3722).
• Using loc to assign column values to a new row index now correctly preserves the column CRS and geometry dtype on pandas 3.1, due to an upstream bug fix (#3741, Pandas #62523)
• Random states in pointpats methods of sample_points can now be fixed with rng (#3737).

Full Changelog: geopandas/geopandas@v1.1.2...v1.1.3

Changelog

Sourced from geopandas's changelog.

Version 1.1.3 (March 10, 2026)

This release addresses a handful of small compatibility issues with pandas 3.0 and backports some bugfixes.

Bug fixes:

• Improved compatibility with pandas 3.0 Copy-on-Write feature, making use of deferred copies where possible (#3298, #3711).
• Fix GeoSeries.sample_points not accepting list-like size when generating points using pointpaterns (#3710).
• Fix from_wkt/wkb to correctly handle missing values with pandas 3 (where the new str dtype is used) (#3714).
• Fix to_postgis to correctly handle missing values with pandas 3 (where the new str dtype is used) (#3722).
• Using loc to assign column values to a new row index now correctly preserves the column CRS and geometry dtype on pandas 3.1, due to an upstream bug fix (#3741, Pandas #62523)
• Random states in pointpats methods of sample_points`` can now be fixed with rng` (#3737).

Commits

• f5fe3ff RLS: v1.1.3
• c104670 pointpats <2.5.3 test compat
• af36b14 ENH: add pointpats as an optional dependency & pass in rng (#3737)
• d9ed84a COMPAT: fix failing test for loc concatenation crs preservation with pandas 3...
• 1b1ddc2 MAINT: use trusted publishing for releasing to PyPI (#3734)
• 8d0c05d changelog
• a424f17 Avoid returning deep copies with pandas 3.0 (with Copy-on-Write) (#3298)
• 03fa43e MAINT: cleanup release warning for project.license table (#3603)
• 29fdb30 CI: remove usage of PANDAS_FUTURE_INFER_STRINGS=0 (#3715)
• 9070e13 missing changelog entries
• Additional commits viewable in compare view

Updates jupyterlab from 4.5.1 to 4.5.6

Release notes

Sourced from jupyterlab's releases.

v4.5.6

4.5.6

(Full Changelog)

Bugs fixed

• Replace scrollback implementation with scroll anchoring outside of full windowing mode #18522 (@​krassowski)
• Harmonize translation wrappers in Python files to use gettext methods #18597 (@​tmetzl)
• Remove unimplemented filebrowser:search command #18593 (@​krassowski)
• Fix status bar focus outlines #18585 (@​IsabelParedes)
• Fix filebrowser:create-new-file context menu selector #18588 (@​jtpio)
• Fix single-character code blocks rendering as empty #18572 (@​soniya-malviy)
• Hide code input in CodeConsole when configured #18554 (@​agriyakhetarpal)

Maintenance and upkeep improvements

• Update benchmark snapshots even if base snapshots require changes #18549 (@​krassowski)

Contributors to this release

The following people contributed discussions, new ideas, code and documentation contributions, and review. See our definition of contributors.

(GitHub contributors page for this release)

@​agriyakhetarpal (activity) | @​IsabelParedes (activity) | @​jtpio (activity) | @​krassowski (activity) | @​soniya-malviy (activity) | @​tmetzl (activity)

v4.5.5

4.5.5

(Full Changelog)

Bugs fixed

• Fix theme settings broken in non-English locales #18530 (@​apoorvdarshan)
• Fix comms subshell resource management on disposal and when changing settings #18531 (@​krassowski)
• Upgrade @codemirror/view, fixing slow selection when line wrapping is enabled #18479 (@​krassowski)
• Only turn off overflow anchor when windowing is active #18503 (@​jasongrout)
• Fix table of contents navigation for Markdown files #18411 (@​itsmevichu)

Maintenance and upkeep improvements

• Update to marked 17.0.2 and mermaid 11.12.3 #18532 (@​bollwyvl, @​krassowski)

Contributors to this release

... (truncated)

Commits

• e514705 [ci skip] Publish 4.5.6
• a6dda88 Backport PR #18522 on branch 4.5.x (Replace scrollback implementation with sc...
• 4a28719 Backport PR #18597 on branch 4.5.x (Harmonize translation wrappers in Python ...
• 1714c4a Backport PR #18593 on branch 4.5.x (Remove unimplemented filebrowser:search...
• 3624bbe Backport PR #18585 on branch 4.5.x (Fix status bar focus outlines) (#18590)
• bf99d9d Backport PR #18588 on branch 4.5.x (Fix filebrowser:create-new-file context...
• 5b6dee9 Backport PR #18572 on branch 4.5.x (Fix single-character code blocks renderin...
• da80d67 Backport PR #18554 on branch 4.5.x (Hide code input in CodeConsole when c...
• 5267a8c Backport PR #18549 on branch 4.5.x (Update benchmark snapshots even if base s...
• 72d29f4 [ci skip] Publish 4.5.5
• Additional commits viewable in compare view

Updates pandas from 2.3.3 to 3.0.1

Release notes

Sourced from pandas's releases.

pandas 3.0.1

We are pleased to announce the release of pandas 3.0.1. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

pandas 3.0.0

We are pleased to announce the release of pandas 3.0.0, a major release from the pandas 2.x series. This release includes various new features, bug fixes, and performance improvements, as well as possible breaking changes.

The pandas 3.0 release removed a functionality that was deprecated in previous releases. It is recommended to first upgrade to pandas 2.3 and to ensure your code is working without warnings, before upgrading to pandas 3.0.

Highlights include:

• Dedicated string data type by default
• Consistent copy/view behaviour with Copy-on-Write (CoW) (a.k.a. getting rid of the SettingWithCopyWarning)
• New default resolution for datetime-like data
• Initial support for the new pd.col syntax

See the announcement blog post and the detailed release notes for a list of all the changes.

Pandas 3.0.0 supports Python 3.11 and higher. The release can be installed from PyPI

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Pandas 3.0.0rc2

No release notes provided.

Pandas 3.0.0rc1

... (truncated)

Commits

• e04b26f RLS: 3.0.1 (#64206)
• 47909e6 [backport 3.0.x] ENH: Add item() method to ExtensionArray class (#64134) (#64...
• a061bfd Backport PR #64199 on branch 3.0.x (DOC: cleanup 3.0.1 whatsnew) (#64201)
• 085a385 [backport 3.0.x] BUG: Fix read_hdf failing on generic datetime64 dtype (#6400...
• 5f17047 [backport 3.0.x] BUG: use fill_null fallback for bug in pyarrow 21 on Windows...
• 0d3a8cb Backport PR #64122 on branch 3.0.x (REG: Allow RE2 syntax in str.contains and...
• 78e1917 Backport PR #64185 on branch 3.0.x (TST: remove fixed xfail for PyArrow 23.0....
• 75a42ca Backport PR #64168 on branch 3.0.x (TST: add legacy file generation and tests...
• 46d443f Backport PR #64092 on branch 3.0.x (BUG: DataFrame.loc fills b'' instead of N...
• 9d67932 Backport PR #64068 on branch 3.0.x (BUG: fixed to_timedelta with list of int ...
• Additional commits viewable in compare view

Updates rasterio from 1.4.4 to 1.5.0

Release notes

Sourced from rasterio's releases.

1.5.0

Dependencies:

• Minimum supported versions: Python 3.12+, GDAL 3.8+, & numpy 2+ (#3465, #3467, #3468)
• Vendor click-plugins (#3367)

Enhancements:

• Add float16 dtype (#3469)
• rasterio.cache: Add invalidate() and invalidate_all() for invalidation of responses in Rasterio's HTTP cache (#3276).
• rasterio.crs: The CRS class has a new, lazily computed, geodetic_crs property (#3218)
• rasterio.enum: Add Interleaving.tile (#3479)
• rasterio.features.shapes: float64 fully supported GDAL 3.12.1 (#3477)
• rasterio.features.shapes: Add uint32,uint64,int64 dtypes & warn for possible truncation (#3456)
• rasterio.plot.show: Add indexes & percent_range parameters to handle rgb image missing color interpretation & enable histogram stretching (#3171)
• rasterio.warp.reproject: Modify tolerance to be an argument in (#3325)
• Move project metadata to pyproject.toml (PEP 621) (#3430)
• Use Lapack solve to more accurately compute affine reverse transforms (#3315)
• rasterio.open: Add thread_safe parameter (#3496)
• rasterio.session: Add support for additional Azure credentials (#3482)

Bug fixes:

• Ensure dataset can be closed multiple times (#3480)
• Remove duplicate dataset cleanup (#3473, #3366)
• Use rasterio & numpy dtypes internally instead of strings (#3472)
• Use context manager for MemoryDataset (#3461)
• rasterio.warp: Don't fill masked output when reprojecting (#3471)
• rasterio.warp: Filter GDALCreateGenImgProjTransformer2 options (#3460)
• rasterio.show_versions: Use importlib.metadata.version (#3488)
• Static GDAL runtime version check (#3487)
• Use GDAL open flag constants (#3494)
• Documentation (#3459, #3458, #3455, #3346)
• Tests (#3429, #3502, #3501, #3498)
• Code linting (#3457)

Deprecations:

• rasterio.warp.transform_geom: Deprecate antimeridian_cutting & antimeridian_offset (#3474)

Packaging notes:

• Wheel: GDAL 3.12.1 (#3491, #3493, #3497)
• Search for GDAL installation path on Windows (#3498)

Full list of software versions

Contributors

• @​a-gn

... (truncated)

Changelog

Sourced from rasterio's changelog.

1.5.0 (2026-01-05)

Dependencies:

• Minimum supported versions: Python 3.12+, GDAL 3.8+, & numpy 2+ (#3465, #3467, #3468)
• Vendor click-plugins (#3367)

Enhancements:

• Add float16 dtype (#3469)
• rasterio.cache: Add invalidate() and invalidate_all() for invalidation of responses in Rasterio's HTTP cache (#3276).
• rasterio.crs: The CRS class has a new, lazily computed, geodetic_crs property (#3218)
• rasterio.enum: Add Interleaving.tile (#3479)
• rasterio.features.shapes: float64 fully supported GDAL 3.12.1 (#3477)
• rasterio.features.shapes: Add uint32,uint64,int64 dtypes & warn for possible truncation (#3456)
• rasterio.plot.show: Add indexes & percent_range parameters to handle rgb image missing color interpretation & enable histogram stretching (#3171)
• rasterio.warp.reproject: Modify tolerance to be an argument in (#3325)
• Move project metadata to pyproject.toml (PEP 621) (#3430)
• Use Lapack solve to more accurately compute affine reverse transforms (#3315)
• rasterio.open: Add thread_safe parameter (#3496)
• rasterio.session: Add support for additional Azure credentials (#3482)

Bug fixes:

• Ensure dataset can be closed multiple times (#3480)
• Remove duplicate dataset cleanup (#3473, #3366)
• Use rasterio & numpy dtypes internally instead of strings (#3472)
• Use context manager for MemoryDataset (#3461)
• rasterio.warp: Don't fill masked output when reprojecting (#3471)
• rasterio.warp: Filter GDALCreateGenImgProjTransformer2 options (#3460)
• rasterio.show_versions: Use importlib.metadata.version (#3488)
• Static GDAL runtime version check (#3487)
• Use GDAL open flag constants (#3494)
• Documentation (#3459, 3458, #3455, #3346)
• Tests (#3429, #3502, #3501, #3498)
• Code linting (#3457)

Deprecations:

• rasterio.warp.transform_geom: Deprecate antimeridian_cutting & antimeridian_offset (#3474)

Packaging notes:

• Wheel: GDAL 3.12.1 (#3491, #3493, #3497)
• Search for GDAL installation path on Windows (#3498)

Full list of software versions: https://github.com/rasterio/rasterio/blob/1.5.0/ci/config.sh#L1-L25

Full Changelog: rasterio/rasterio@1.4.4...1.5.0

Commits

• 8286da3 MNT: Version 1.5.0
• 6bcb46b MNT: version 1.5rc1
• af426f9 CLN: Use -_GDAL_AT_LEAST_3_11 from rasterio.env (#3503)
• 52c9c86 Drop click-plugins dependency from pyproject.toml & update doc link. (#3504)
• cb961c8 MNT: version 1.5rc0
• cefcb7e DOC: Update changelog
• 92be526 Merge pull request #3498
• b22bd66 CI: Remove unsupported pip option (#3030)
• 3241ae3 TST: Also skip memfile thread_safe test on macOS (#3030, #3499)
• cbd7eb0 TST: Remove red overview before moving green one to it (#3030)
• Additional commits viewable in compare view

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