[core][flink][spark] Refresh data evolution vector indexes incrementally

docs/generated/core_configuration.html

@@ -782,6 +782,12 @@
             <td>String</td>
             <td>Global index root directory, if not set, the global index files will be stored under the &lt;table-root-directory&gt;/index.</td>
         </tr>
+        <tr>
+            <td><h5>global-index.ignore-missing-delete</h5></td>
+            <td style="word-wrap: break-word;">false</td>
+            <td>Boolean</td>
+            <td>Whether to ignore deleting a global index file which does not exist in the previous index manifest.</td>
+        </tr>
         <tr>
             <td><h5>global-index.row-count-per-shard</h5></td>
             <td style="word-wrap: break-word;">100000</td>

paimon-api/src/main/java/org/apache/paimon/CoreOptions.java

@@ -2507,6 +2507,13 @@ public String toString() {
                                     "Defines the action to take when an update modifies columns that are covered by a global index. "
                                             + "IGNORE leaves existing index files unchanged and may make the index stale.");
 
+    public static final ConfigOption<Boolean> GLOBAL_INDEX_IGNORE_MISSING_DELETE =
+            key("global-index.ignore-missing-delete")
+                    .booleanType()
+                    .defaultValue(false)
+                    .withDescription(
+                            "Whether to ignore deleting a global index file which does not exist in the previous index manifest.");
+
     public static final ConfigOption<MemorySize> LOOKUP_MERGE_BUFFER_SIZE =
             key("lookup.merge-buffer-size")
                     .memoryType()
@@ -3559,6 +3566,10 @@ public GlobalIndexColumnUpdateAction globalIndexColumnUpdateAction() {
         return options.get(GLOBAL_INDEX_COLUMN_UPDATE_ACTION);
     }
 
+    public boolean globalIndexIgnoreMissingDelete() {
+        return options.get(GLOBAL_INDEX_IGNORE_MISSING_DELETE);
+    }
+
     public LookupStrategy lookupStrategy() {
         return LookupStrategy.from(
                 mergeEngine().equals(MergeEngine.FIRST_ROW),

paimon-core/src/main/java/org/apache/paimon/append/dataevolution/DataEvolutionRowIdReassigner.java

@@ -857,7 +857,8 @@ private RewrittenIndexManifest rewriteIndexManifest(Assignment assignment) {
                             rewrittenRange.to,
                             globalIndex.indexFieldId(),
                             globalIndex.extraFieldIds(),
-                            globalIndex.indexMeta());
+                            globalIndex.indexMeta(),
+                            globalIndex.sourceMeta());
             IndexFileMeta newIndexFile =
                     new IndexFileMeta(
                             indexFile.indexType(),

paimon-core/src/main/java/org/apache/paimon/globalindex/DataEvolutionGlobalIndexRefreshPlanner.java

@@ -0,0 +1,230 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.paimon.globalindex;
+
+import org.apache.paimon.data.BinaryRow;
+import org.apache.paimon.index.DataEvolutionIndexSourceMeta;
+import org.apache.paimon.index.GlobalIndexMeta;
+import org.apache.paimon.io.DataFileMeta;
+import org.apache.paimon.manifest.FileKind;
+import org.apache.paimon.manifest.IndexManifestEntry;
+import org.apache.paimon.manifest.ManifestEntry;
+import org.apache.paimon.schema.SchemaManager;
+import org.apache.paimon.types.DataField;
+import org.apache.paimon.utils.Pair;
+import org.apache.paimon.utils.Range;
+
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.Comparator;
+import java.util.HashMap;
+import java.util.HashSet;
+import java.util.List;
+import java.util.Map;
+import java.util.NavigableMap;
+import java.util.Set;
+import java.util.TreeMap;
+
+import static org.apache.paimon.utils.DataEvolutionUtils.fileFieldIds;
+
+/** Plans existing global index files which need refresh after data-evolution updates. */
+public final class DataEvolutionGlobalIndexRefreshPlanner {
+
+    private DataEvolutionGlobalIndexRefreshPlanner() {}
+
+    public static List<IndexManifestEntry> findIndexesToRefresh(
+            SchemaManager schemaManager,
+            List<ManifestEntry> dataEntries,
+            List<IndexManifestEntry> indexEntries,
+            List<DataField> indexedFields) {
+        Set<Integer> indexedFieldIds = new HashSet<>();
+        for (DataField field : indexedFields) {
+            indexedFieldIds.add(field.id());
+        }
+
+        Map<Pair<BinaryRow, Integer>, RefreshGroup> groups = new HashMap<>();
+        for (int i = 0; i < indexEntries.size(); i++) {
+            IndexManifestEntry indexEntry = indexEntries.get(i);
+            GlobalIndexMeta indexMeta = indexEntry.indexFile().globalIndexMeta();
+            if (indexEntry.kind() != FileKind.ADD
+                    || indexMeta == null
+                    || !matchesFields(indexMeta, indexedFields)) {
+                continue;
+            }
+
+            byte[] sourceMeta = indexMeta.sourceMeta();
+            if (!DataEvolutionIndexSourceMeta.isDataEvolutionMeta(sourceMeta)) {
+                // Legacy indexes have no trustworthy scan baseline and require an explicit rebuild.
+                continue;
+            }
+            long scanSnapshotId =
+                    DataEvolutionIndexSourceMeta.deserialize(sourceMeta).scanSnapshotId();
+            groups.computeIfAbsent(
+                            Pair.of(indexEntry.partition(), indexEntry.bucket()),
+                            key -> new RefreshGroup())
+                    .addIndex(i, indexMeta.rowRange(), scanSnapshotId);
+        }
+
+        Map<Pair<Long, List<String>>, Set<Integer>> fileFieldIdsCache = new HashMap<>();
+        for (ManifestEntry dataEntry : dataEntries) {
+            DataFileMeta file = dataEntry.file();
+            if (dataEntry.kind() != FileKind.ADD || file.firstRowId() == null) {
+                continue;
+            }
+
+            RefreshGroup group = groups.get(Pair.of(dataEntry.partition(), dataEntry.bucket()));
+            if (group == null || !group.mayContainUpdate(file)) {
+                continue;
+            }
+
+            Set<Integer> physicalFieldIds =
+                    fileFieldIdsCache.computeIfAbsent(
+                            Pair.of(file.schemaId(), file.writeCols()),
+                            key -> fileFieldIds(schemaManager::schema, file));
+            if (!disjoint(indexedFieldIds, physicalFieldIds)) {
+                group.addDataFile(file);
+            }
+        }
+
+        boolean[] indexesToRefresh = new boolean[indexEntries.size()];
+        for (RefreshGroup group : groups.values()) {
+            group.markIndexesToRefresh(indexesToRefresh);
+        }
+
+        List<IndexManifestEntry> result = new ArrayList<>();
+        for (int i = 0; i < indexEntries.size(); i++) {
+            if (indexesToRefresh[i]) {
+                result.add(indexEntries.get(i));
+            }
+        }
+        return result;
+    }
+
+    private static final class RefreshGroup {
+
+        private final List<IndexQuery> indexes = new ArrayList<>();
+        private final List<DataFileMeta> dataFiles = new ArrayList<>();
+        private final MergedRanges indexedRanges = new MergedRanges();
+        private long minScanSnapshotId = Long.MAX_VALUE;
+
+        private void addIndex(int ordinal, Range rowRange, long scanSnapshotId) {
+            indexes.add(new IndexQuery(ordinal, rowRange, scanSnapshotId));
+            indexedRanges.add(rowRange);
+            minScanSnapshotId = Math.min(minScanSnapshotId, scanSnapshotId);
+        }
+
+        private boolean mayContainUpdate(DataFileMeta file) {
+            return file.maxSequenceNumber() > minScanSnapshotId
+                    && indexedRanges.intersects(file.nonNullRowIdRange());
+        }
+
+        private void addDataFile(DataFileMeta file) {
+            dataFiles.add(file);
+        }
+
+        private void markIndexesToRefresh(boolean[] result) {
+            // As scan watermarks decrease, eligible data files only grow.
+            dataFiles.sort(Comparator.comparingLong(DataFileMeta::maxSequenceNumber).reversed());
+            indexes.sort((left, right) -> Long.compare(right.scanSnapshotId, left.scanSnapshotId));
+
+            MergedRanges updatedRanges = new MergedRanges();
+            int nextFile = 0;
+            for (IndexQuery index : indexes) {
+                while (nextFile < dataFiles.size()
+                        && dataFiles.get(nextFile).maxSequenceNumber() > index.scanSnapshotId) {
+                    updatedRanges.add(dataFiles.get(nextFile).nonNullRowIdRange());
+                    nextFile++;
+                }
+                if (updatedRanges.intersects(index.rowRange)) {
+                    result[index.ordinal] = true;
+                }
+            }
+        }
+    }
+
+    private static final class IndexQuery {
+
+        private final int ordinal;
+        private final Range rowRange;
+        private final long scanSnapshotId;
+
+        private IndexQuery(int ordinal, Range rowRange, long scanSnapshotId) {
+            this.ordinal = ordinal;
+            this.rowRange = rowRange;
+            this.scanSnapshotId = scanSnapshotId;
+        }
+    }
+
+    /** Dynamically merged inclusive ranges supporting logarithmic intersection checks. */
+    private static final class MergedRanges {
+
+        private final NavigableMap<Long, Long> ranges = new TreeMap<>();
+
+        private void add(Range range) {
+            long from = range.from;
+            long to = range.to;
+
+            Map.Entry<Long, Long> floor = ranges.floorEntry(from);
+            if (floor != null && floor.getValue() >= from) {
+                from = floor.getKey();
+                to = Math.max(to, floor.getValue());
+                ranges.remove(floor.getKey());
+            }
+
+            Map.Entry<Long, Long> next = ranges.ceilingEntry(from);
+            while (next != null && next.getKey() <= to) {
+                to = Math.max(to, next.getValue());
+                ranges.remove(next.getKey());
+                next = ranges.ceilingEntry(from);
+            }
+            ranges.put(from, to);
+        }
+
+        private boolean intersects(Range range) {
+            Map.Entry<Long, Long> floor = ranges.floorEntry(range.to);
+            return floor != null && floor.getValue() >= range.from;
+        }
+    }
+
+    private static boolean matchesFields(GlobalIndexMeta meta, List<DataField> fields) {
+        if (fields.isEmpty() || meta.indexFieldId() != fields.get(0).id()) {
+            return false;
+        }
+        int[] expectedExtraFields =
+                fields.size() == 1
+                        ? null
+                        : fields.subList(1, fields.size()).stream()
+                                .mapToInt(DataField::id)
+                                .toArray();
+        int[] actualExtraFields = meta.extraFieldIds();
+        if (actualExtraFields == null || actualExtraFields.length == 0) {
+            return expectedExtraFields == null || expectedExtraFields.length == 0;
+        }
+        return expectedExtraFields != null && Arrays.equals(actualExtraFields, expectedExtraFields);
+    }
+
+    private static boolean disjoint(Set<Integer> left, Set<Integer> right) {
+        for (Integer value : left) {
+            if (right.contains(value)) {
+                return false;
+            }
+        }
+        return true;
+    }
+}