Repository navigation

Release 2026.3.0 - #907

Merged

bencap merged 280 commits into

mainfrom

release-2026.3.0

Oct 15, 2026

Merged

Release 2026.3.0#907
bencap merged 280 commits into
mainfrom
release-2026.3.0

This pull request is big! We're only showing the most recent 250 commits

Commits on Jul 9, 2026
Commits on Jul 10, 2026
- refactor(annotations): rename AnnotationLayer to SequenceLevel and type assay_level
  bencap
  committed
  0a365d0
- fix(docs): remove design references from endpoint documentation
  bencap
  committed
  ccf5b69
Commits on Jul 12, 2026
- feat(allele-measurements): rank current measurements before superseded
  bencap
  committed
  19072d6
Commits on Jul 13, 2026
- feat(clinical-controls): tag control links with annotating allele digest
  bencap
  committed
  0ff6cd0
- refactor(allele-measurements): expose preferred classification, exclude RUO
  bencap
  committed
  bb369d9
Commits on Jul 15, 2026
- feat(clingen): batch CAR submissions and add HTTP timeouts
  bencap
  committed
  c1fb812
- feat(worker): stop linking protein-level alleles to ClinVar and gnomAD
  bencap
  committed
  3b9f7da
Commits on Jul 16, 2026
- feat(uniprot): support Ensembl protein accessions in UniProt ID mapping
  
  davereinhart
  authored and
  bencap
  committed
  4377e72
- Add Ensembl transcript (ENST) support to sequence accession inference
  
  davereinhart
  authored and
  bencap
  committed
  f1655ee
- chore(export): add changelog to public data archive and document release process
  bencap
  committed
  b1adc4f
- feat(worker): detect stuck RUNNING jobs via progress heartbeat
  bencap
  committed
  947b744
Commits on Jul 17, 2026
- Merge branch 'release-2026.2.8' of https://github.com/VariantEffect/mavedb-api into release-2026.2.8
  bencap
  committed
  95a2917
- feat(uniprot): support Ensembl protein accessions in UniProt ID mapping
  
  davereinhart
  authored and
  bencap
  committed
  4e1ddf5
- Add Ensembl transcript (ENST) support to sequence accession inference
  
  davereinhart
  authored and
  bencap
  committed
  97cf2f3
- chore(export): add changelog to public data archive and document release process
  bencap
  committed
  1bf1c2b
- feat(worker): detect stuck RUNNING jobs via progress heartbeat
  bencap
  committed
  6765600
- Merge branch 'release-2026.3.0' of https://github.com/VariantEffect/mavedb-api into release-2026.3.0
  bencap
  committed
  b1c84da
Commits on Jul 18, 2026
Commits on Jul 20, 2026
Commits on Jul 21, 2026
- feat(migration): add manual backfill of allele substrate from mapped_variants
  bencap
  committed
  575a2e2
- feat(serving): rewrite annotation views and stats MV onto mapping_records
  bencap
  committed
  b3fd1ba
Commits on Jul 22, 2026
- perf(gnomad): batch allele lookup in gnomAD linker to end per-row scans
  bencap
  committed
  9a3ded6
- feat(scripts): gate unenriched selection on a usable transcript
  bencap
  committed
  0f6ba0b
Commits on Jul 23, 2026
Commits on Jul 24, 2026
- fix(measurements): reach a CA's protein consequence unconditionally
  bencap
  committed
  fbfd4b9
- feat(cleanup): extend job timeouts
  bencap
  committed
  a9c2f40
Commits on Aug 17, 2026
Commits on Aug 18, 2026
- fix(worker): clear stale uniprot_id_from_mapped_metadata on remap
  davereinhart
  committed
  db2bb49
- Merge branch 'main' into release-2026.3.0
  bencap
  committed
  5fad56a
- Merge branch 'release-2026.2.8' into release-2026.3.0
  bencap
  committed
  c72206f
Commits on Aug 19, 2026
- Clear stale HGNC gene info on remap when mapping returns none
  davereinhart
  committed
  79b3a6b
- Merge branch 'release-2026.3.0' into feature/bencap/allele-centric-mapping-and-storage
  bencap
  committed
  36c1043
Commits on Aug 20, 2026
- test(worker): cover stale mapped_hgnc_name clearing on remap
  davereinhart
  committed
  bef917a
- Merge pull request #849 from VariantEffect/fix/davereinhart/794/clear-stale-uniprot-id
  davereinhart
  authored
  62ca7f7
Commits on Aug 24, 2026
Commits on Aug 26, 2026
Commits on Aug 28, 2026
Commits on Sep 2, 2026
Commits on Sep 8, 2026
- test(urns): guard the forwarding lib tests behind the server extra
  davereinhart
  committed
  c2153f3
Commits on Sep 11, 2026
- Fix the outer source not found error in both Method sources and Threshold sources in creating a new score set and calibration.
  EstelleDa
  committed
  32879d2
Commits on Sep 14, 2026
Commits on Sep 15, 2026
Commits on Sep 16, 2026
Commits on Sep 18, 2026
Commits on Sep 19, 2026
- Merge pull request #861 from VariantEffect/fix/hgvs-validate-parse-error-500
  bencap
  authored
  f65ac35
Commits on Sep 21, 2026
Commits on Sep 23, 2026
- Modify the find_generic_article function.
  EstelleDa
  committed
  4138248
- Debug a test.
  EstelleDa
  committed
  a068959
Commits on Sep 24, 2026
- feat(reverse-translation): record UTA outages as api_error and reconnect UTA
  bencap
  committed
  8a28b20
Commits on Sep 28, 2026
Commits on Sep 29, 2026
Commits on Sep 30, 2026
Commits on Oct 1, 2026
- feat(cat-vrs): cross-reference ClinGen, gnomAD and ClinVar records in CategoricalVariant mappings
  bencap
  committed
  8e8abed
Commits on Oct 2, 2026
Commits on Oct 5, 2026
Commits on Oct 6, 2026
- Add more except cases and some related tests.
  EstelleDa
  committed
  abb36e4
Commits on Oct 7, 2026
Commits on Oct 8, 2026
Commits on Oct 9, 2026
Commits on Oct 10, 2026
- fix(worker): give mapping an hour before its size-aware budget starts
  bencap
  committed
  5e763ac
Commits on Oct 12, 2026
- feat(audit): scope audits to current score sets and split codon-straddle findings
  bencap
  committed
  7f7bb6d
- feat(audit): flag SeqRepo sequences carrying a foreign ga4gh alias
  bencap
  committed
  aff9c82
Commits on Oct 14, 2026
Commits on Oct 15, 2026