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Antismash query#174

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kathryncrouch wants to merge 64 commits intomasterfrom
antismash_query
Draft

Antismash query#174
kathryncrouch wants to merge 64 commits intomasterfrom
antismash_query

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Add a query for genes in secondary metabolite clusters

kathryncrouch and others added 30 commits March 20, 2026 12:24
Add SubjectResult, OntologyTermResult, and compound profile unions
(results.CompoundMassSpec and apidb.CompoundMassSpecResult) back to the
Profile tuning table. Uses LEFT JOIN on apidb.organism with COALESCE for
datasets where taxon_id is NULL. Also adds corresponding external
dependencies and removes stale commented-out entries for Lopit and
EigenGeneWgcna.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
…or; \

consider only non-zero NaFeatureExpression rows for fold-change computation
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
bgajria and others added 30 commits April 27, 2026 10:09
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6 participants