University Medicine Essen
Popular repositories Loading
-
FHIR-PYrate
FHIR-PYrate PublicFHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter reso…
-
Body-and-Organ-Analysis
Body-and-Organ-Analysis PublicBOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical …
-
saros-dataset
saros-dataset PublicSparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data
-
Repositories
- SALT Public
Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.
- PIGEON Public
This repository presents a reproducible framework for transforming structured FHIR data into synthetic German patient information texts. The generated corpus is used to fine-tune large language models for extracting structured medical information, providing a foundation for developing and evaluating clinical NLP applications.
- saros-dataset Public
Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data
- BOA-Profiles Public
A collection of HL7 FHIR profiles for AI-based Body and Organ Analysis (BOA). These profiles standardize the representation of body composition biomarkers extracted from CT imaging, enabling interoperable storage, exchange, and reuse across healthcare systems.
- Volcano-HL7-MLLP-Connector Public
A high-performance HL7 v2 MLLP listener that converts healthcare messages to JSON and publishes them to Apache Kafka.
- CycleMED Public
CycleMED is a CycleGAN-based framework for medical image translation projects using MRI and CT data. The repository provides custom dataset loader including specific medical imaging preprocessings and adaptions for training runs.
- DeidentiFHIR Public
- BOA-MR Public
BOA-MR brings automated body composition analysis to T2-weighted MRI. Built by SHIP.AI @ the University Medicine Essen (UME) and the Institute for Artificial Intelligence in Medicine(IKIM) as the open companion to BOA CT.
- FHIR-PYrate Public
FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.
- MumbleMED Public
MumbleMED is developed by SHIP.AI group at the Institute for Artificial Intelligence in Medicine (IKIM) at the University Hospital Essen.
Top languages
Loading…
Most used topics
Loading…