Refactor SEM Specification#203

Merged

Maximilian-Stefan-Ernst merged 56 commits intoStructuralEquationModels:develfrom

alyst:refactor_semspec

May 31, 2024

Commits on May 27, 2024

SemSpecification base type
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SemSpecification: use in methods
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rename identifier -> param
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ParTable: columns[:identifier] => columns[:param]
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getindex(EnsParTable, i) instead of get_group()

Alexey Stukalov
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replace no-op ctors with convert(T, obj)

Alexey Stukalov
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ParamTable: convert vars from Dict to fields
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ParamTable: update StenGraph-based ctor

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rename Base.sort() to sort_vars()

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don't import ==

Alexey Stukalov
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don't import push!()

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don't import DataFrame
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remove no-op push!()

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ParTable ctor: simplify rows code
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ParTable: full support for Iterator iface
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RAMConstant: simplify

Alexey Stukalov
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RAMMatrices: optimize F_indices init

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RAMMatrices: declare types for all fields

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RAMMatrices: option to keep zero constants

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nonunique() helper function

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add check_vars() and check_params()
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RAMMatrices ctor: dims and vars checks
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RAMMatrices: cleanup params index
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include RAMMatrices before EnsParTable
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fix EnsParTable to Dict{RAMMatrices} convert

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DataFrame(EnsParTable)

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params() API method
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EnsParTable ctor: enforce same params in tables

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formatting fixes
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ParTable ctor: allow providing columns data
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update_partable!() cleanup + docstring
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update_partable!(): SemFit methods use basic one
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ParTable: add explicit params field
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n_par() -> nparams()

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param_values(ParTable)

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lavaan_param_values(lav_fit, partable)
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compare_estimates() -> test_estimates()
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update_partable!(): dict-based generic version

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ParTable: getindex() returns NamedTuple
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ParTable: graph-based ctor supports params= kw
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rename parameter_type to relation
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sem_summary(): cleanup filters
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fix sem_summary method for partable

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show(ParTable): suppress NaNs
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sort_vars!(ParTable): cleanup
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Project.toml: disable SymbolicUtils 1.6
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Project.toml: support StenoGraphs 0.3
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RAM ctor: better error for missing meanstruct

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add function param_indices

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start fixing docs

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fix regularization docs

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introduce formatting error

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update_start(): fix docstring typo

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push!(::ParTable, Tuple): check keys compat

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SemObsCov ctor: restrict n_obs to integer
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fixup param_indices()
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