Unit Tests and Slow Running API Integration Tests for R and Python #2

	on:
	workflow_dispatch:

	name: Unit Tests and Slow Running API Integration Tests for R and Python

	jobs:
	testing:
	name: test-slow-api-combinations
	runs-on: ${{ matrix.os }}

	strategy:
	fail-fast: false
	matrix:
	os: [ubuntu-latest, windows-latest, macos-latest]

	steps:
	- name: Prevent conversion of line endings on Windows
	if: startsWith(matrix.os, 'windows')
	shell: pwsh
	run: git config --global core.autocrlf false

	- name: Checkout repository
	uses: actions/checkout@v4
	with:
	submodules: 'recursive'

	- name: Setup Python 3.10
	uses: actions/setup-python@v5
	with:
	python-version: "3.10"
	cache: "pip"

	- name: Set up openmp (macos)
	# Set up openMP on MacOS since it doesn't ship with the apple clang compiler suite
	if: matrix.os == 'macos-latest'
	run: \|
	brew install libomp

	- name: Install Package with Relevant Dependencies
	run: \|
	pip install --upgrade pip
	pip install -r requirements.txt
	pip install .

	- name: Run Pytest with Slow Running API Tests Enabled
	run: \|
	pytest --runslow test/python

	- name: Setup Pandoc for R
	uses: r-lib/actions/setup-pandoc@v2

	- name: Setup R
	uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- name: Setup R Package Dependencies
	uses: r-lib/actions/setup-r-dependencies@v2
	with:
	extra-packages: any::testthat, any::decor, any::rcmdcheck
	needs: check

	- name: Create a CRAN-ready version of the R package
	run: \|
	Rscript cran-bootstrap.R 0 0 1

	- name: Run CRAN Checks with Slow Running API Tests Enabled
	uses: r-lib/actions/check-r-package@v2
	env:
	RUN_SLOW_TESTS: true
	with:
	working-directory: 'stochtree_cran'

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