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Default fineMappingPipeline L to 10 and greedy-L off - #592

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gaow merged 1 commit into
StatFunGen:mainfrom
Yining97:finemap-l-defaults
Sep 3, 2026
Merged

gaow merged 1 commit into
StatFunGen:mainfrom
Yining97:finemap-l-defaults

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@Yining97 Yining97 commented Sep 3, 2026

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fineMappingPipeline and .fmNormalizeMethods now default L to 10 (was 20) and Lgreedy to NULL (was 5), so the greedy-L loop is off unless a caller asks for it. Both stay overridable — pass L / Lgreedy, or a per-method L / L_greedy; passing Lgreedy = 5 reproduces the old default.

Updated the two tests that asserted the old filled-in defaults. The .twasMethodLookup path keeps its own L_greedy = 5 — separate code, out of scope.

Pairs with the RSS pipeline default change (xqtl-protocol #1422).

fineMappingPipeline and .fmNormalizeMethods now default L to 10 (was 20) and Lgreedy to NULL (was 5), so the greedy-L loop is off unless a caller asks for it. Both stay overridable; passing Lgreedy = 5 reproduces the old default. Updated the two tests that checked the old filled-in defaults. The .twasMethodLookup path keeps its own L_greedy = 5 (separate code).
@gaow
gaow merged commit 8efd2ec into StatFunGen:main Sep 3, 2026
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@Yining97
Yining97 deleted the finemap-l-defaults branch September 3, 2026 21:25
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2 participants