fix allele filtering

[danielnachun]

No description provided.

[codecov]

Codecov Report

❌ Patch coverage is 96.66667% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 97.30%. Comparing base (f0e38ac) to head (d88d5f0).
⚠️ Report is 2 commits behind head on main.

Files with missing lines	Patch %	Lines
R/ld.R	83.33%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #590      +/-   ##
==========================================
- Coverage   97.30%   97.30%   -0.01%     
==========================================
  Files          68       68              
  Lines       27966    27979      +13     
==========================================
+ Hits        27213    27225      +12     
- Misses        753      754       +1     

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