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Better logic to handle KS4 version and update to 4.0.30 #84

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Merged
alejoe91 merged 1 commit into from
Mar 21, 2025
Merged

Better logic to handle KS4 version and update to 4.0.30 #84

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5 changes: 4 additions & 1 deletion kilosort4/Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,9 @@ FROM nvidia/cuda:12.0.0-base-ubuntu20.04

LABEL maintainer="Alessio Buccino <alessiop.buccino@gmail.com>"

ENV KILOSORT4_VERSION=4.0.30


# USER root
# Ubuntu package installs
RUN apt update && \
Expand Down Expand Up @@ -35,4 +38,4 @@ RUN conda init bash
RUN pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cu118

# install kilosort4
RUN pip install kilosort==4.0.18
RUN pip install kilosort==$KILOSORT4_VERSION
6 changes: 5 additions & 1 deletion kilosort4/build.sh
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@@ -1,3 +1,7 @@
#!/bin/bash

docker build -t spikeinterface/kilosort4-base:latest -t spikeinterface/kilosort4-base:4.0.18_cuda-12.0.0 .
# Extract the KILOSORT4_VERSION from the Dockerfile
KILOSORT4_VERSION=$(grep -E '^ENV KILOSORT4_VERSION=' "Dockerfile" | awk -F= '{print $2}' | tr -d '[:space:]')
echo "Building kilosort4-base:$KILOSORT4_VERSION"

docker build -t spikeinterface/kilosort4-base:latest -t spikeinterface/kilosort4-base:${KILOSORT4_VERSION}_cuda-12.0.0 .
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