Add R script to process data #6
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R script for parsing human interactome based on experimental evidence values R script for taking PANTHER pathways and parsing into STRING ID edge list
Now can access a list of TFs and Receptors to process a PANTHER pathway into sources and targets.
Used the function to generate Source and Target sets for 14 PANTHER pathways
Fixed API calling bug where responses were not being unzipped. Need to develop a way to handle NA entries from the STRING and ENSEMBL mapping services.
No API calls are required and we have less data loss from namespace mapping
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Closed in favor of #22. |
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R script for parsing human interactome based on experimental evidence values
R script for taking PANTHER pathways and parsing into STRING ID edge list