Synthetic Network Preprocessing #10
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ctrlaltaf
commented
Feb 24, 2025
ctrlaltaf
commented
- Includes @oliverfanderson features to process the STRINGdb human interactome network, PantherDB pathways, generate source/target and prizes, and namespace mapping between STRING and PantherDB
R script for parsing human interactome based on experimental evidence values R script for taking PANTHER pathways and parsing into STRING ID edge list
Now can access a list of TFs and Receptors to process a PANTHER pathway into sources and targets.
Used the function to generate Source and Target sets for 14 PANTHER pathways
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Closed in favor of #22. |
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