nnUNet runner improvements - #9108

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DanielNobbe wants to merge 15 commits into

Project-MONAI:devfrom

DanielNobbe:fix-nnunet

Commits on Jul 27, 2026

nnunet runner: allow missing keys in datalist when copying
DanielNobbe
committed
bd82b95
nnunet runner: allow missing training key if only testing
DanielNobbe
committed
09c00d0
nnunet runner: get input channels and num classes from config
DanielNobbe
committed
bc64b64
nnunet runner: convert_dataset: remove exception capture since it does not give meaningful information
DanielNobbe
committed
9abc370
nnunet runner: improve consistency in plans identifier
DanielNobbe
committed
b8b5135
nnunet runner: allow pipeline to finish when nnunet does not train all configs
DanielNobbe
committed
96dddbf

Commits on Sep 9, 2026

functionality to predict on and create datalists
DanielNobbe
committed
d28afee
stylistic fixes
DanielNobbe
committed
3fd137c
add import
DanielNobbe
committed
e0db408
improve documentation
DanielNobbe
committed
b13f6fc
improve new filename naming
DanielNobbe
committed
7f5bc98
Merge branch 'dev' into fix-nnunet
DanielNobbe
authored
762bd25

Commits on Sep 10, 2026

improve docstring
DanielNobbe
committed
bb68687
add plans_identifier to tests
DanielNobbe
committed
30ffd54
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot]
committed
3b8c827