update documentation images and remove old material

doc/source/images/generate_io_overview.py

@@ -0,0 +1,114 @@
+# -*- coding: utf-8 -*-
+
+"""
+This generate diagram of the (raw)ios and formats
+
+
+Author: Julia Sprenger
+"""
+
+import pygraphviz
+import neo
+
+# from datetime import datetime
+#
+# import numpy as np
+# import quantities as pq
+# from matplotlib import pyplot
+# from matplotlib.patches import Rectangle, ArrowStyle, FancyArrowPatch
+# from matplotlib.font_manager import FontProperties
+#
+# from neo.test.generate_datasets import fake_neo
+#
+# line_heigth = .22
+# fontsize = 10.5
+# left_text_shift = .1
+# dpi = 100
+
+
+default_style = {'shape': 'rectangle',
+                 'color': 'black',
+                 'fontcolor': 'black'}
+IO_style = default_style.copy()
+IO_style['fontsize'] = '30'
+IO_style['penwidth'] = 6
+
+styles = {'IO': {'ro': IO_style.copy(),
+                 'rw': IO_style.copy(),
+                 'raw': IO_style.copy()
+                 },
+          'main': default_style.copy(),
+          'ext': default_style.copy()}
+
+styles['IO']['ro']['color'] = '#20B2AA '
+styles['IO']['rw']['color'] = '#4169E1 '
+styles['IO']['raw']['color'] = '#008080 '
+styles['ext']['shape'] = 'circle'
+styles['ext']['fillcolor'] = 'red'
+styles['ext']['style'] = 'filled'
+
+
+# styles['ext']['fixedsize'] = 'True'
+
+
+def generate_diagram(filename, plot_extensions=False):
+    dia = pygraphviz.AGraph(strict=False, splines='true')
+    G = dia
+    G.node_attr['fontname'] = 'Arial'
+    # G.node_attr['shape'] = 'circle'
+    # G.node_attr['fixedsize'] = 'true'
+    # G.node_attr['sep'] = '-100'
+    G.node_attr['fixedsize'] = 'False'
+    # G.graph_attr['overlap'] = 'False'
+    G.graph_attr['packMode'] = 'clust'
+    # G.graph_attr['levelsgap'] = -500
+    G.node_attr['fontsize'] = '20'
+    G.edge_attr['minlen'] = '0'
+    # G.node_attr['style'] = 'filled'
+    # G.graph_attr['outputorder'] = 'edgesfirst'
+    # G.graph_attr['splines'] = "compound"
+    G.graph_attr['label'] = "NEO {}".format(neo.__version__)
+    G.graph_attr['ratio'] = '1.0'
+    # G.edge_attr['color'] = '#1100FF'
+
+    G.edge_attr['style'] = 'setlinewidth(4)'
+
+    dia.add_node('NEO', shape='circle', fontsize=50)
+
+    for io in neo.io.iolist:
+        io_name = io.name
+        rawio = False
+        if issubclass(io, neo.io.basefromrawio.BaseFromRaw):
+            rawio = True
+            if io_name == 'BaseIO':
+                io_name = io.__name__.rstrip('RawIO')
+        if io_name is None:
+            io_name = io.__name__.rstrip('IO')
+        if 'example' in io_name:
+            continue
+
+        if io.is_writable and io.is_readable:
+            mode = 'rw'
+        elif io.is_readable:
+            mode = 'ro'
+        if rawio:
+            mode = 'raw'
+
+        dia.add_node(io_name, **styles['IO'][mode])
+        dia.add_edge('NEO', io_name)
+
+        if plot_extensions:
+            for ext in io.extensions:
+                dia.add_node(ext, **styles['ext'])
+                dia.add_edge(io_name, ext, minlen=0)
+
+    dia.layout(prog='fdp')  # neato, dot, twopi, circo, fdp, nop, wc, acyclic, gvpr, gvcolor,
+    # ccomps, sccmap, tred, sfdp.
+    for ext in ['png', 'svg', 'eps']:
+        dia.draw('{}.{}'.format(filename, ext))
+
+
+if __name__ == '__main__':
+    generate_diagram('IODiagram', plot_extensions=False)
+    generate_diagram('IODiagram_ext', plot_extensions=True)
+    # pyplot.show()