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[sedv8808]

This pull request updates a variety of test cases for several API endpoints, mainly by changing the test input parameters (such as IDs and query string values) and adding new endpoint test files. The changes ensure that the tests use current, relevant, or more representative data, and expand test coverage for dataset-related endpoints.

Test Coverage Expansion:

• Added new test files for the endpoints /v2.0/data/datasets/{datasetid}/assays and /v2.0/data/datasets/{datasetid}/projects, each with a test to verify a 200 response for a sample dataset. [1] [2]

Test Parameter Updates:

• Updated test parameters (IDs, query values, etc.) across multiple test files to use new or different values for endpoints related to contacts, datasets, geopolitical units, and other resources. This affects test files such as test/v2.0-data-contacts-test.js, test/v2.0-data-datasets-test.js, test/v2.0-data-geopoliticalunits-test.js, and others. [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18]

These updates help ensure the tests are aligned with the current state of the data and API, and improve the reliability and relevance of the test suite.

[Copilot]

Pull request overview

This PR refreshes API integration test inputs across multiple v1.5 and v2.0 endpoints (IDs, query string parameters), adds basic tests for two dataset-related endpoints, and extends the aeDNA assays-by-dataset payload to include additional FAIRe project fields.

Changes:

• Updated many Chakram tests to use new IDs/query parameters for contacts, datasets, sites, spatial, taxa, publications, and apps endpoints.
• Added new tests for /v2.0/data/datasets/{datasetid}/assays and /v2.0/data/datasets/{datasetid}/projects (status 200 checks).
• Extended assaysbydataset.sql to include sterilisemethod, negcont, and poscont in the assay JSON payload.

Reviewed changes

Copilot reviewed 37 out of 39 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
v2.0/helpers/assays/assaysbydataset.sql	Adds additional assay JSON fields (FAIRe-related) to the assays-by-dataset payload.
test/v2.0-data-taxa-test.js	Updates query params used in taxa list test.
test/v2.0-data-speleothems-{collectionunitid}-test.js	Updates collection unit ID used in speleothems test.
test/v2.0-data-spatial-lakes-test.js	Updates spatial lakes query params (siteid/buffer).
test/v2.0-data-spatial-icesheet-test.js	Updates icesheet query param (age).
test/v2.0-data-spatial-faunal-test.js	Updates faunal query param (sciname).
test/v2.0-data-sites-test.js	Updates sites search query params (IDs/filters).
test/v2.0-data-sites-{siteid}-test.js	Updates site ID used in site-by-id test.
test/v2.0-data-sites-{siteid}-datasets_elc-test.js	Updates site ID used in site datasets_elc test.
test/v2.0-data-sites-{siteid}-contacts-test.js	Updates site ID used in site contacts test.
test/v2.0-data-publications-test.js	Updates publications query params (IDs/filters).
test/v2.0-data-publications-{publicationid}-test.js	Updates publication ID used in publication-by-id test.
test/v2.0-data-pollen-test.js	Updates pollen query params (IDs/filters).
test/v2.0-data-pollen-{id}-test.js	Updates pollen record ID used in pollen-by-id test.
test/v2.0-data-occurrences-test.js	Updates occurrences query params (IDs/filters).
test/v2.0-data-geopoliticalunits-test.js	Updates geopolitical units query params (rank/lower).
test/v2.0-data-geopoliticalunits-{gpid}-test.js	Updates GPID used in geopoliticalunit-by-id test.
test/v2.0-data-geopoliticalunits-{gpid}-sites-test.js	Updates GPID used in geopoliticalunit sites test.
test/v2.0-data-geopoliticalunits-{gpid}-datasets-test.js	Updates GPID used in geopoliticalunit datasets test.
test/v2.0-data-dbtables-test.js	Updates dbtables list query params (table/count).
test/v2.0-data-dbtables-{table}-test.js	Updates table path segment and count param in dbtables-by-table test.
test/v2.0-data-datasets-test.js	Updates datasets query params (IDs/filters).
test/v2.0-data-datasets-db-test.js	Updates datasets/db query param (database).
test/v2.0-data-datasets-{datasetid}-projects-test.js	Adds a basic 200-response test for dataset projects endpoint.
test/v2.0-data-datasets-{datasetid}-assays-test.js	Adds a basic 200-response test for dataset assays endpoint.
test/v2.0-data-datasets_elc-test.js	Updates datasets_elc query params (IDs/filters).
test/v2.0-data-contacts-test.js	Updates contacts query params (IDs/filters).
test/v2.0-data-contacts-{contactid}-test.js	Updates contact ID used in contact-by-id test.
test/v2.0-data-contacts-{contactid}-sites-test.js	Updates contact ID used in contact sites test.
test/v2.0-data-contacts-{contactid}-publications-test.js	Updates contact ID used in contact publications test.
test/v2.0-apps-taphonomysystems-test.js	Updates datasettypeid used in taphonomysystems test.
test/v2.0-apps-depenvt-test.js	Updates depenvt query params (siteid/datasetid/collectionunitid).
test/v2.0-apps-constdb-datasetuploads-test.js	Updates dbid used in constituent-db datasetuploads test.
test/v2.0-apps-constdb-datasets-test.js	Updates dbid used in constituent-db datasets test.
test/v2.0-apps-constdb-datasetages-test.js	Updates dbid used in constituent-db datasetages test.
test/v1.5-data-geopoliticalunits-{gpid}-test.js	Updates GPID used in v1.5 geopoliticalunit-by-id test.
test/v1.5-data-contacts-{contactid}-test.js	Updates contact ID used in v1.5 contact-by-id test.

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