Skip to content

Add docker image for portability#1

Open
tyronechen wants to merge 23 commits intoMonashBioinformaticsPlatform:mainfrom
tyronechen:bioc_envs
Open

Add docker image for portability#1
tyronechen wants to merge 23 commits intoMonashBioinformaticsPlatform:mainfrom
tyronechen:bioc_envs

Conversation

@tyronechen
Copy link
Copy Markdown

Hi MBP, thanks for this useful tool

  • Previously used the version from commit 173082f and found it very helpful
  • Unfortunately ran into some libR.so issues during lattice compilation in some machines
    • if R version is not compiled with --enable-R-shlib
  • Made this Docker image and github workflow to work around that
    • but note that the versions wont align 100% with renv
  • Also added qs2

On an unrelated note, i saw that some paths were hardcoded in the latest commit post processing which results in the shiny app breaking
(I can open a separate pull request for this later on)

server.R:sc1conf = readRDS("sc1conf.rds")
ui.R:sc1conf = readRDS("sc1conf.rds")

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant