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fix: correct SIRS comment typos in mimic-iii and mimic-iv #2143

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Merged
alistairewj merged 3 commits into from
Aug 9, 2026
+8 −8
Merged

fix: correct SIRS comment typos in mimic-iii and mimic-iv #2143

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d36cc1c
fix(mimic-iv): correct SIRS score comment typos in sirs.sql
Chessing234 Jul 31, 2026
27ba003
fix(mimic-iii): correct SIRS score comment typos in sirs.sql
Chessing234 Jul 31, 2026
44a925e
chore: regenerate postgres and duckdb SIRS copies after comment fixes
Chessing234 Jul 31, 2026
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4 changes: 2 additions & 2 deletions mimic-iii/concepts/severityscores/sirs.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -88,7 +88,7 @@ left join `physionet-data.mimiciii_derived.labs_first_day` l
, case
when wbc_min < 4.0 then 1
when wbc_max > 12.0 then 1
when bands_max > 10 then 1-- > 10% immature neurophils (band forms)
when bands_max > 10 then 1 -- > 10% immature neutrophils (band forms)
when coalesce(wbc_min, bands_max) is null then null
else 0
end as wbc_score
Expand All @@ -97,7 +97,7 @@ left join `physionet-data.mimiciii_derived.labs_first_day` l
)
select
ie.subject_id, ie.hadm_id, ie.icustay_id
-- Combine all the scores to get SOFA
-- Combine all component scores to get SIRS
-- Impute 0 if the score is missing
, coalesce(temp_score,0)
+ coalesce(heartrate_score,0)
Expand Down
4 changes: 2 additions & 2 deletions mimic-iii/concepts_postgres/severityscores/sirs.sql
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Expand Up @@ -58,7 +58,7 @@ WITH bg AS (
WHEN wbc_max > 12.0
THEN 1
WHEN bands_max > 10
THEN 1 /* > 10% immature neurophils (band forms) */
THEN 1 /* > 10% immature neutrophils (band forms) */
WHEN COALESCE(wbc_min, bands_max) IS NULL
THEN NULL
ELSE 0
Expand All @@ -68,7 +68,7 @@ WITH bg AS (
SELECT
ie.subject_id,
ie.hadm_id,
ie.icustay_id, /* Combine all the scores to get SOFA */ /* Impute 0 if the score is missing */
ie.icustay_id, /* Combine all component scores to get SIRS */ /* Impute 0 if the score is missing */
COALESCE(temp_score, 0) + COALESCE(heartrate_score, 0) + COALESCE(resp_score, 0) + COALESCE(wbc_score, 0) AS sirs,
temp_score,
heartrate_score,
Expand Down
4 changes: 2 additions & 2 deletions mimic-iv/concepts/score/sirs.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -76,7 +76,7 @@ WITH scorecomp AS (
, CASE
WHEN wbc_min < 4.0 THEN 1
WHEN wbc_max > 12.0 THEN 1
WHEN bands_max > 10 THEN 1-- > 10% immature neurophils (band forms)
WHEN bands_max > 10 THEN 1 -- > 10% immature neutrophils (band forms)
WHEN COALESCE(wbc_min, bands_max) IS NULL THEN NULL
ELSE 0
END AS wbc_score
Expand All @@ -86,7 +86,7 @@ WITH scorecomp AS (

SELECT
ie.subject_id, ie.hadm_id, ie.stay_id
-- Combine all the scores to get SOFA
-- Combine all component scores to get SIRS
-- Impute 0 if the score is missing
, COALESCE(temp_score, 0)
+ COALESCE(heart_rate_score, 0)
Expand Down
4 changes: 2 additions & 2 deletions mimic-iv/concepts_postgres/score/sirs.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -54,7 +54,7 @@ WITH scorecomp AS (
WHEN wbc_max > 12.0
THEN 1
WHEN bands_max > 10
THEN 1 /* > 10% immature neurophils (band forms) */
THEN 1 /* > 10% immature neutrophils (band forms) */
WHEN COALESCE(wbc_min, bands_max) IS NULL
THEN NULL
ELSE 0
Expand All @@ -64,7 +64,7 @@ WITH scorecomp AS (
SELECT
ie.subject_id,
ie.hadm_id,
ie.stay_id, /* Combine all the scores to get SOFA */ /* Impute 0 if the score is missing */
ie.stay_id, /* Combine all component scores to get SIRS */ /* Impute 0 if the score is missing */
COALESCE(temp_score, 0) + COALESCE(heart_rate_score, 0) + COALESCE(resp_score, 0) + COALESCE(wbc_score, 0) AS sirs,
temp_score,
heart_rate_score,
Expand Down
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