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Implementation of from_alphafold - #5457

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jauy123 wants to merge 114 commits into
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jauy123:fetcher_alphafold
Open

Implementation of from_alphafold#5457
jauy123 wants to merge 114 commits into
MDAnalysis:developfrom
jauy123:fetcher_alphafold

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@jauy123

@jauy123 jauy123 commented Aug 12, 2026

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Fixes #5432

Changes made in this Pull Request:

  • Implements from_alphafold using StaticFetcher

LLM / AI generated code disclosure

LLMs or other AI-powered tools (beyond simple IDE use cases) were used in this contribution: no

PR Checklist

  • Issue raised/referenced?
  • Tests updated/added?
  • Documentation updated/added?
  • package/CHANGELOG file updated?
  • Is your name in package/AUTHORS? (If it is not, add it!)
  • I have read and understand the current AI Policy
  • LLM/AI disclosure was updated.

Developers Certificate of Origin

I certify that I can submit this code contribution as described in the Developer Certificate of Origin, under the MDAnalysis LICENSE.

@jauy123 jauy123 changed the title Fetcher alphafold Implementation of from_alphafold Aug 12, 2026
@jauy123

jauy123 commented Aug 12, 2026

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This diverged from #5436 using StaticFetcher as a base.

@jauy123

jauy123 commented Aug 12, 2026

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Docs need to be updated

@read-the-docs-community

read-the-docs-community Bot commented Aug 12, 2026

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@codecov

codecov Bot commented Aug 12, 2026

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Codecov Report

❌ Patch coverage is 97.27891% with 4 lines in your changes missing coverage. Please review.
✅ Project coverage is 93.88%. Comparing base (83bc9a2) to head (d7eefc8).
⚠️ Report is 2 commits behind head on develop.

Files with missing lines Patch % Lines
package/MDAnalysis/fetch/fetchers.py 96.74% 3 Missing and 1 partial ⚠️
Additional details and impacted files
@@             Coverage Diff             @@
##           develop    #5457      +/-   ##
===========================================
+ Coverage    93.87%   93.88%   +0.01%     
===========================================
  Files          182      183       +1     
  Lines        22510    22650     +140     
  Branches      3202     3227      +25     
===========================================
+ Hits         21131    21266     +135     
- Misses         917      921       +4     
- Partials       462      463       +1     

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@jauy123

jauy123 commented Aug 12, 2026

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Docs are also done here

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[GSoC 2026] Implementation of from_alphafold()

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