Adding standalone compression workflow#114

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SkepticRaven wants to merge 25 commits intomainfrom

compression-standalone

Commits on Oct 30, 2025

Adding standalone compression workflow
SkepticRaven
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Converting to array jobs and fixing object paths ('///' and '/' paths are not equivalent in object storage!)
SkepticRaven
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Commits on Oct 31, 2025

Fixing some docstrings and add in slurm script
SkepticRaven
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Commits on Nov 5, 2025

Bumping retrieval to 4G
SkepticRaven
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Commits on Nov 10, 2025

Allowing continuation when tasks fail and correcting comparitor
SkepticRaven
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Commits on Nov 14, 2025

Bumping number of retrieval tasks to 4
SkepticRaven
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Commits on Nov 17, 2025

Commits on Nov 20, 2025

Adding some support code to parse and plot nextflow report data
SkepticRaven
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Commits on Nov 21, 2025

Commits on Nov 25, 2025

Doubling retrievals again
SkepticRaven
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Commits on Nov 28, 2025

Fixing some parsing of special characters
SkepticRaven
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Commits on Dec 24, 2025

Moving retrieval to main compute (lifting limits)
SkepticRaven
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Commits on Dec 29, 2025

Cloudian goes on compute, not xfer
SkepticRaven
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Commits on Jan 5, 2026

Set queueSize to 0
bergsalex
committed

Commits on Jan 9, 2026

Updating rclone dropbox secret location
bergsalex
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