chore(deps): bump the all-julia-packages group across 2 directories with 4 updates

[dependabot]

Updates the requirements on Mooncake, DifferentiationInterfaceTest, Tables and DataAPI to permit the latest version.
Updates Mooncake to 0.5.0

Release notes

Sourced from Mooncake's releases.

v0.5.0

Mooncake v0.5.0

Diff since v0.4.203

Breaking changes

• Make Complex{<:IEEEFloat} its own tangent type (chalk-lab/Mooncake.jl#953).
• Use Mooncake.Config in the interface (chalk-lab/Mooncake.jl#977).

Merged pull requests:

• Canonicalising tangent types (#971) (@​yebai)
• Bump version from 0.4.203 to 0.4.204 (#973) (@​AstitvaAggarwal)
• Mooncake v0.5.0: Use Config in the interface (#977) (@​Technici4n)

Changelog

Sourced from Mooncake's changelog.

0.5.0

Breaking Changes

• The tangent type of a Complex{P<:IEEEFloat} is now Complex{P} instead of Tangent{@NamedTuple{re::P, im::P}}.
• The prepare_pullback_cache, prepare_gradient_cache and prepare_derivative_cache interface functions now accept a Mooncake.Config directly.

0.4.147

Public Interface

• Mooncake offers forward mode AD.
• Two new functions added to the public interface: prepare_derivative_cache and value_and_derivative!!.
• One new type added to the public interface: Dual.

Internals

• get_interpreter was previously a zero-arg function. Is now a unary function, called with a "mode" argument: get_interpreter(ForwardMode), get_interpreter(ReverseMode).
• @zero_derivative should now be preferred to @zero_adjoint. @zero_adjoint will be removed in 0.5.
• @from_chainrules should now be preferred to @from_rrule. @from_rrule will be removed in 0.5.

Commits

• 80cc727 Mooncake v0.5.0: Use Config in the interface (#977)
• 7b2f7ba Use non-parametric alias or full form.
• ad0c3c2 Refine CF alias with type constraint.
• a9c72fd Bump version from 0.4.203 to 0.4.204 (#973)
• 863d8e2 clarifying rules for new, lgetfield, and lsetfield! in customised tangents ...
• d6d0ada Make Complex{<:IEEEFloat} its own tangent type (#953)
• 05c93de replace overlay with matrixify (see #961) (#966)
• 0be696d fix typos (#964)
• ae44b48 run formatting CI on LTS only (#960)
• cfdaf2d support matrix-vector or vector-matrix in gemm (#942)
• Additional commits viewable in compare view

Updates DifferentiationInterfaceTest to 0.11.0

Release notes

Sourced from DifferentiationInterfaceTest's releases.

DifferentiationInterfaceTest-v0.11.0

DifferentiationInterfaceTest DifferentiationInterfaceTest-v0.11.0

Diff since DifferentiationInterfaceTest-v0.10.4

Breaking changes

Removed JET, Chairmarks and DataFrames dependencies:

• To analyze type stability, run using JET first
• To benchmark, run using Chairmarks first and manually convert the resulting table into a DataFrame if necessary

Merged pull requests:

• Minor tweaks to "Mathematical model" docs (#922) (@​adrhill)
• docs: clarify multithreading limitations (#923) (@​gdalle)
• chore: replace CompatHelper with dependabot (#924) (@​gdalle)
• chore: revamp testing CI with dedicated environments (#926) (@​gdalle)
• perf: improve wrong-mode pushforward/pullback for scalars (#931) (@​gdalle)
• fix: improve wrong-mode pushforward/pullback (#932) (@​gdalle)
• chore: ignore Diffractor in dependabot (#933) (@​gdalle)
• chore(deps): bump actions/checkout from 5 to 6 (#934) (@​dependabot[bot])
• test: toggle fail fast (#936) (@​gdalle)
• fix: function shadows for higher-order Enzyme (#943) (@​gdalle)
• feat: allow non-numeric arguments with AutoSymbolics (#945) (@​AayushSabharwal)
• chore: bump DI to v0.7.13 (#946) (@​gdalle)
• Fix inner preparation behavior for Mooncake (#948) (@​yebai)
• chore: bump DI + changelog (#952) (@​gdalle)
• fix: overloaded_input_type for one-element vector input (#954) (@​ErikQQY)
• test: bypass failing Enzyme test until upstream fix (#955) (@​gdalle)
• chore: bump DI to v0.7.15 (#956) (@​gdalle)
• fix!: turn Chairmarks and JET into weakdeps (#958) (@​gdalle)

Closed issues:

• Overhead of function call to get output shape in pushforward-via-pullback (#930)
• Fix second order with FunctionContext in Enzyme (#937)
• This is not an issue (#941)
• Missing _shadow method in Enzyme extension (#942)
• Missing basis method (#944)
• Precompilation error with weakdeps (#947)
• inner second order and outer optimization AD? (#953)

Commits

• a266e80 fix!: turn Chairmarks and JET into weakdeps (#958)
• 8d33550 chore: bump DI to v0.7.15 (#956)
• 5996df5 fix: overloaded_input_type for one-element vector input (#954)
• d6b05e4 test: bypass failing Enzyme test until upstream fix (#955)
• cd515b3 chore: bump DI + changelog (#952)
• 07e4a54 Fix inner preparation behavior for Mooncake (#948)
• 45fad0e fix: function shadows for higher-order Enzyme (#943)
• 325f2b8 chore: bump DI to v0.7.13 (#946)
• c892c22 feat: allow non-numeric arguments with AutoSymbolics (#945)
• 0dd1abf test: toggle fail fast until Enzyme bug is fixed (#936)
• Additional commits viewable in compare view

Updates Tables to 1.12.1

Release notes

Sourced from Tables's releases.

v1.12.1

Tables v1.12.1

Diff since v1.12.0

Merged pull requests:

• Update index.md (#358) (@​chrbauer)
• Fix markdown lists in docstring (#359) (@​abhro)
• Fix columntable materialization on stored schema (#360) (@​quinnj)
• Improve show for AbtractRow (#362) (@​omus)
• Modernize CI workflows (#363) (@​omus)
• Create dependabot.yml (#364) (@​abhro)
• Documentation updates (#365) (@​abhro)
• Bump actions/checkout from 2 to 4 (#366) (@​dependabot[bot])
• Add link to TableTransforms.jl (#369) (@​juliohm)
• Update README.md (#371) (@​juliohm)

Closed issues:

• Unexpected complaint about too-wide a table (#357)
• Improve show when printing vectors of AbstractRows (#361)

Commits

• 06abc19 Update Project.toml
• 31d1575 Update README.md (#371)
• 7ea1e91 Add link to TableTransforms.jl (#369)
• f14359b Bump actions/checkout from 2 to 4 (#366)
• ba84f9f Documentation updates (#365)
• e77f606 Create dependabot.yml (#364)
• ec4c199 Improve show for AbtractRow (#362)
• 305aebc Modernize CI workflows (#363)
• 14edc59 Fix columntable materialization on stored schema (#360)
• 722ffce Fix markdown lists in docstring (#359)
• Additional commits viewable in compare view

Updates DataAPI to 1.16.0

Release notes

Sourced from DataAPI's releases.

v1.16.0

DataAPI v1.16.0

Diff since v1.15.0

Merged pull requests:

• Update README.md for main branch (#63) (@​kescobo)
• add a groupby method (#64) (@​rafaqz)

Commits

• d6d1b05 add a groupby method (#64)
• b1e6855 Update README.md for main branch (#63)
• b131356 Add rownumber (#61)
• 7fa794b Add operator kwarg to Cols (#58)
• 69313ee make it easier to work with metadata by providing more default behaviors (#56)
• ca91305 Update metadata API (#53)
• 32ef840 add metadata (#48)
• 5c927b6 clarify Between docstring
• e8f7842 add allcombinations (#47)
• 3e905a6 Add skipmissing argument to levels (#46)
• Additional commits viewable in compare view

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